Variant report

Variant	rs12782563
Chromosome Location	chr10:57659338-57659339
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 21 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs11005093	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11005094	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11005095	0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11005096	0.95[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61852025	0.84[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:16 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040047	chr10:57007182-57979747	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Weak transcription Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv516121	chr10:57438407-57728708	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
3	nsv1038525	chr10:57439194-57727917	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv1035651	chr10:57439194-57731104	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv1042161	chr10:57456215-57696091	Enhancers ZNF genes & repeats Flanking Active TSS Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
6	nsv540644	chr10:57456215-57696091	Flanking Active TSS Active TSS Enhancers ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
7	nsv1036127	chr10:57470352-57727983	Active TSS Enhancers ZNF genes & repeats Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
8	nsv1051512	chr10:57470352-58026988	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
9	nsv540645	chr10:57470352-58026988	Weak transcription Enhancers Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
10	nsv1049079	chr10:57498545-57668664	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
11	nsv831881	chr10:57504989-57696340	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv430239	chr10:57513594-57697094	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats	Chromatin interactive region	n/a	inside rSNPs	diseases
13	nsv1035611	chr10:57577564-57762083	Enhancers Flanking Active TSS Weak transcription Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
14	esv2750965	chr10:57634812-57779230	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
15	nsv895498	chr10:57646996-57788090	Flanking Active TSS Enhancers Active TSS Weak transcription ZNF genes & repeats	Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
16	nsv975773	chr10:57655145-57673008	Active TSS Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats	n/a	n/a	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:57657400-57659400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr10:57657600-57659800	Active TSS	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr10:57658000-57659400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
4	chr10:57658400-57659800	Active TSS	ES-I3 Cell Line	embryonic stem cell
5	chr10:57658400-57660000	Active TSS	HUES6 Cell Line	embryonic stem cell
6	chr10:57658600-57659400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr10:57658800-57659400	Active TSS	ES-WA7 Cell Line	embryonic stem cell
8	chr10:57658800-57659400	Active TSS	Pancreatic Islets	Pancreatic Islet
9	chr10:57659000-57659400	Flanking Active TSS	iPS-20b Cell Line	embryonic stem cell
10	chr10:57659000-57659800	Active TSS	iPS-15b Cell Line	embryonic stem cell
11	chr10:57659000-57660000	Active TSS	HUES48 Cell Line	embryonic stem cell
12	chr10:57659000-57660000	Active TSS	iPS-18 Cell Line	embryonic stem cell
13	chr10:57659200-57659600	Active TSS	Dnd41	blood
14	chr10:57659200-57659800	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
15	chr10:57659200-57659800	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr10:57659200-57659800	Active TSS	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
17	chr10:57659200-57660000	Active TSS	H1 Cell Line	embryonic stem cell
18	chr10:57659200-57660000	Active TSS	H9 Cell Line	embryonic stem cell
19	chr10:57659200-57660000	Active TSS	HUES64 Cell Line	embryonic stem cell
20	chr10:57659200-57660000	Active TSS	ES-UCSF4 Cell Line	embryonic stem cell

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