Variant report

Variant	rs12791425
Chromosome Location	chr11:4949087-4949088
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 44 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs10500624	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11600505	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11600508	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11602621	0.87[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11602673	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.84[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11824573	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs11826210	1.00[CHB][hapmap];1.00[JPT][hapmap];0.82[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12786996	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12787985	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12788401	1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12788743	1.00[CHB][hapmap];0.85[JPT][hapmap];1.00[YRI][hapmap]
rs12789377	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs12794614	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12795973	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs12801574	0.89[CEU][hapmap];1.00[JPT][hapmap]
rs12804154	0.83[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs12807322	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12807351	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12807538	0.90[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17339295	0.89[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2442426	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2570576	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2570582	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2570583	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2595992	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2595994	1.00[CHB][hapmap];1.00[JPT][hapmap];0.83[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2595995	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2595996	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2595997	0.89[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2596001	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2605298	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2605300	0.96[ASN][1000 genomes]
rs2605301	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2605302	0.85[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs2605304	0.82[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs36049521	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7945456	1.00[CHB][hapmap];1.00[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:7 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	nsv7652	chr11:4946245-4997769	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
5	nsv1052130	chr11:4948148-4974017	Flanking Active TSS Enhancers	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
6	nsv1049277	chr11:4948160-4974017	Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
7	nsv1036758	chr11:4948560-4974017	Enhancers Flanking Active TSS	TF binding region Chromatin interactive region	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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