Variant report
| Variant | rs12801574 |
|---|---|
| Chromosome Location | chr11:4947596-4947597 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:0)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
| No data |
rSNPs within LD-proxies of this variant (count:34)
| rs_ID | r2[population] |
|---|---|
| rs10500624 | 0.88[CEU][hapmap];1.00[JPT][hapmap] |
| rs11600505 | 0.89[CEU][hapmap];1.00[JPT][hapmap] |
| rs11600508 | 0.89[CEU][hapmap];1.00[JPT][hapmap] |
| rs11602621 | 0.87[CEU][hapmap];1.00[JPT][hapmap] |
| rs11602673 | 0.88[CEU][hapmap];1.00[JPT][hapmap] |
| rs11824573 | 1.00[JPT][hapmap] |
| rs11826210 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs12786133 | 0.87[CEU][hapmap] |
| rs12786996 | 0.87[CEU][hapmap];0.84[CHB][hapmap];1.00[JPT][hapmap] |
| rs12787985 | 0.88[CEU][hapmap];1.00[JPT][hapmap] |
| rs12788401 | 0.86[CEU][hapmap];1.00[JPT][hapmap] |
| rs12788743 | 0.86[CEU][hapmap];0.85[JPT][hapmap] |
| rs12789377 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs12791425 | 0.89[CEU][hapmap];1.00[JPT][hapmap] |
| rs12794614 | 0.88[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap] |
| rs12795973 | 1.00[JPT][hapmap] |
| rs12807322 | 0.88[CEU][hapmap];1.00[JPT][hapmap] |
| rs12807351 | 1.00[JPT][hapmap] |
| rs12807538 | 0.80[CEU][hapmap];1.00[JPT][hapmap] |
| rs17339295 | 1.00[JPT][hapmap] |
| rs2442426 | 0.85[JPT][hapmap] |
| rs2570576 | 0.88[CEU][hapmap];1.00[JPT][hapmap] |
| rs2570582 | 0.88[CEU][hapmap];0.85[JPT][hapmap] |
| rs2570583 | 0.88[CEU][hapmap];1.00[JPT][hapmap] |
| rs2595992 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs2595994 | 0.88[CEU][hapmap];1.00[JPT][hapmap] |
| rs2595995 | 0.88[CEU][hapmap];1.00[JPT][hapmap] |
| rs2595996 | 1.00[JPT][hapmap] |
| rs2596001 | 0.89[CEU][hapmap];1.00[JPT][hapmap] |
| rs2605298 | 0.88[CEU][hapmap];1.00[JPT][hapmap] |
| rs2605301 | 1.00[JPT][hapmap] |
| rs2605302 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs2605304 | 1.00[CEU][hapmap];1.00[JPT][hapmap] |
| rs7945456 | 0.88[CEU][hapmap];1.00[JPT][hapmap] |
Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page:
1
| No. | Variant name | Chromosome position | Chromatin state | Related regulatory elements | Target genes | Extended variants | Associated traits |
|---|---|---|---|---|---|---|---|
| 1 | nsv1054847 | chr11:4642875-5200656 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription | TF binding regionCpG islandChromatin interactive regionlncRNA | 72 gene(s) | inside rSNPs | diseases |
| 2 | esv2758254 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| 3 | esv2759799 | chr11:4907893-5135331 | Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS | TF binding regionCpG islandChromatin interactive regionlncRNA | 42 gene(s) | inside rSNPs | diseases |
| 4 | nsv7652 | chr11:4946245-4997769 | Enhancers Flanking Active TSS Weak transcription | TF binding regionCpG islandChromatin interactive region | 19 gene(s) | inside rSNPs | diseases |
| No data |
Chromatin state (count:0 , 50 per page) page:
| No data |
