Variant report

Variant	rs2442426
Chromosome Location	chr11:4976081-4976082
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 188 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10500624	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs11600505	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11600508	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs11602621	1.00[CHB][hapmap];0.82[JPT][hapmap]
rs11602673	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs11824573	1.00[CHB][hapmap]
rs11826210	1.00[CEU][hapmap];1.00[CHB][hapmap];0.82[JPT][hapmap]
rs12786996	1.00[CHB][hapmap]
rs12787985	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs12788401	1.00[CHB][hapmap]
rs12788743	1.00[CHB][hapmap]
rs12789377	1.00[CHB][hapmap]
rs12791425	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12794614	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs12795973	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12801574	0.85[JPT][hapmap]
rs12807322	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs12807351	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs12807538	1.00[CHB][hapmap];0.85[JPT][hapmap]
rs17339295	1.00[CHB][hapmap];0.84[JPT][hapmap]
rs2570576	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs2570582	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs2570583	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs2595992	1.00[CEU][hapmap];1.00[CHB][hapmap];0.85[JPT][hapmap]
rs2595994	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs2595995	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs2595996	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs2596001	1.00[CHB][hapmap];0.85[JPT][hapmap];0.93[YRI][hapmap]
rs2605298	1.00[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap]
rs2605301	1.00[CEU][hapmap];1.00[CHB][hapmap]
rs2605302	0.82[CEU][hapmap];1.00[CHB][hapmap]
rs2605304	1.00[CHB][hapmap]
rs7945456	1.00[CHB][hapmap];0.82[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:155 , 50 per page) page: 1 2 3 4

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1054847	chr11:4642875-5200656	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	72 gene(s)	inside rSNPs	diseases
2	esv2758254	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
3	esv2759799	chr11:4907893-5135331	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	42 gene(s)	inside rSNPs	diseases
4	nsv7652	chr11:4946245-4997769	Enhancers Flanking Active TSS Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
5	nsv1054610	chr11:4953844-5004203	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
6	nsv526998	chr11:4954607-5074301	ZNF genes & repeats Enhancers Flanking Active TSS Weak transcription Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	27 gene(s)	inside rSNPs	diseases
7	nsv1045154	chr11:4958462-5032685	Weak transcription Enhancers Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
8	nsv540937	chr11:4958462-5032685	Enhancers Weak transcription Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	24 gene(s)	inside rSNPs	diseases
9	nsv1046693	chr11:4958462-5177455	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
10	nsv540938	chr11:4958462-5177455	Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	47 gene(s)	inside rSNPs	diseases
11	nsv64	chr11:4959236-4985373	Enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
12	nsv896918	chr11:4960032-5001570	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
13	esv1844673	chr11:4960613-4977065	Inactive region	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
14	esv1798076	chr11:4960949-4977065	Inactive region	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
15	nsv1050555	chr11:4961506-4977070	Inactive region	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
16	nsv1043799	chr11:4961506-4983161	Inactive region	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
17	nsv1046196	chr11:4961506-4995448	Weak transcription Enhancers	TF binding region CpG island Chromatin interactive region	19 gene(s)	inside rSNPs	diseases
18	esv2760169	chr11:4961518-5233821	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	54 gene(s)	inside rSNPs	diseases
19	esv2757419	chr11:4961913-4992282	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases
20	nsv1043027	chr11:4962632-4976522	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
21	nsv1046673	chr11:4962632-4976602	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
22	nsv1050051	chr11:4962632-4977070	Inactive region	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
23	nsv1039389	chr11:4962632-4983161	Inactive region	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
24	nsv1038703	chr11:4962933-4976377	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
25	nsv1054521	chr11:4962933-4983161	Inactive region	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
26	nsv1043268	chr11:4963407-4976602	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
27	nsv1053020	chr11:4963538-4976999	Inactive region	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
28	nsv1042446	chr11:4963707-4977070	Inactive region	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
29	nsv1037087	chr11:4963707-4983161	Inactive region	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
30	nsv1042273	chr11:4964103-4976602	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
31	nsv1044743	chr11:4964103-4976895	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
32	nsv1038354	chr11:4964103-4977070	Inactive region	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
33	nsv1050888	chr11:4964103-4987007	Enhancers	TF binding region CpG island Chromatin interactive region	5 gene(s)	inside rSNPs	diseases
34	esv1800303	chr11:4964289-4977065	Inactive region	TF binding region CpG island	3 gene(s)	inside rSNPs	diseases
35	nsv1045263	chr11:4964302-4976377	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
36	nsv1054833	chr11:4964302-4976602	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
37	nsv1047364	chr11:4964302-4976895	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
38	esv3473641	chr11:4965876-4978774	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
39	esv1814692	chr11:4965963-4977102	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
40	esv1831044	chr11:4965963-4977102	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
41	nsv553189	chr11:4966229-4976241	Inactive region	TF binding region	1 gene(s)	inside rSNPs	diseases
42	esv3364428	chr11:4966276-4977074	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
43	esv3350739	chr11:4966576-4976474	Inactive region	TF binding region CpG island	1 gene(s)	inside rSNPs	diseases
44	esv3510133	chr11:4966726-4978024	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
45	nsv435629	chr11:4966798-4976975	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
46	esv17688	chr11:4966925-4977889	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
47	nsv1036507	chr11:4967061-4977070	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
48	nsv1048352	chr11:4967061-4978382	Inactive region	TF binding region CpG island	2 gene(s)	inside rSNPs	diseases
49	nsv1052561	chr11:4967061-4983161	Inactive region	TF binding region CpG island Chromatin interactive region	4 gene(s)	inside rSNPs	diseases
50	nsv1039806	chr11:4967061-4995989	Enhancers Weak transcription	TF binding region CpG island Chromatin interactive region	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:0 , 50 per page) page:

No data

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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