Variant report

Variant	rs12797625
Chromosome Location	chr11:120897776-120897777
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120897765..120898564-chr7:77325024..77325893,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000214293	Chromatin interaction
ENSG00000187257	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12785765	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12787375	1.00[CEU][hapmap];1.00[AFR][1000 genomes]
rs12794546	1.00[AFR][1000 genomes]
rs12799860	1.00[AFR][1000 genomes]
rs35176806	1.00[AFR][1000 genomes]
rs41297897	1.00[AFR][1000 genomes]
rs71486349	1.00[AFR][1000 genomes]
rs71486352	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1046688	chr11:120894391-120956305	Enhancers Strong transcription Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:59 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120895600-120898200	Weak transcription	Aorta	Aorta
2	chr11:120895800-120918000	Weak transcription	Fetal Muscle Trunk	muscle
3	chr11:120896000-120898400	Weak transcription	Ovary	ovary
4	chr11:120896000-120899800	Weak transcription	A549	lung
5	chr11:120896000-120900600	Weak transcription	Primary B cells from cord blood	blood
6	chr11:120896000-120900600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr11:120896000-120900600	Weak transcription	Left Ventricle	heart
8	chr11:120896000-120900600	Weak transcription	Psoas Muscle	Psoas
9	chr11:120896000-120900600	Weak transcription	Right Ventricle	heart
10	chr11:120896000-120901800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
11	chr11:120896000-120905600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr11:120896000-120905800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
13	chr11:120896000-120910800	Weak transcription	Brain Angular Gyrus	brain
14	chr11:120896000-120910800	Weak transcription	Gastric	stomach
15	chr11:120896000-120915400	Weak transcription	Primary hematopoietic stem cells	blood
16	chr11:120896000-120919600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
17	chr11:120896000-120938600	Weak transcription	Lung	lung
18	chr11:120896200-120899600	Weak transcription	Fetal Kidney	kidney
19	chr11:120896200-120899800	Weak transcription	Fetal Lung	lung
20	chr11:120896200-120900200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
21	chr11:120896200-120900400	Weak transcription	Primary T cells from cord blood	blood
22	chr11:120896200-120906400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
23	chr11:120896200-120909000	Weak transcription	Fetal Intestine Small	intestine
24	chr11:120896200-120909400	Weak transcription	Sigmoid Colon	Sigmoid Colon
25	chr11:120896200-120909600	Weak transcription	Small Intestine	intestine
26	chr11:120896200-120913000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
27	chr11:120896200-120916200	Weak transcription	HSMM	muscle
28	chr11:120896200-120916400	Weak transcription	Primary B cells from peripheral blood	blood
29	chr11:120896200-120916600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
30	chr11:120896200-120924200	Weak transcription	Rectal Mucosa Donor 31	rectum
31	chr11:120896200-120959600	Weak transcription	Primary T helper 17 cells PMA-I stimulated	--
32	chr11:120896400-120900000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
33	chr11:120896400-120903000	Weak transcription	NH-A	brain
34	chr11:120896400-120906200	Weak transcription	HUES48 Cell Line	embryonic stem cell
35	chr11:120896400-120916600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
36	chr11:120896400-120917800	Weak transcription	Duodenum Smooth Muscle	Duodenum
37	chr11:120896400-120918000	Weak transcription	Brain Germinal Matrix	brain
38	chr11:120896400-120924400	Weak transcription	Muscle Satellite Cultured Cells	--
39	chr11:120896600-120897800	Weak transcription	Adipose Nuclei	Adipose
40	chr11:120896600-120898200	Weak transcription	Brain Anterior Caudate	brain
41	chr11:120896600-120899600	Weak transcription	Fetal Heart	heart
42	chr11:120896600-120899800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
43	chr11:120896600-120900200	Weak transcription	Brain Inferior Temporal Lobe	brain
44	chr11:120896600-120900400	Weak transcription	HSMMtube	muscle
45	chr11:120896600-120900600	Weak transcription	Primary T helper cells PMA-I stimulated	--
46	chr11:120896600-120905600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
47	chr11:120896600-120906200	Weak transcription	Breast Myoepithelial Primary Cells	Breast
48	chr11:120896600-120906800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
49	chr11:120896600-120917200	Weak transcription	Primary T cells fromperipheralblood	blood
50	chr11:120896600-120917600	Weak transcription	Fetal Brain Female	brain

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