Variant report

Variant	rs41297897
Chromosome Location	chr11:120838141-120838142
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs12785765	1.00[AFR][1000 genomes]
rs12787375	1.00[AFR][1000 genomes]
rs12797625	1.00[AFR][1000 genomes]
rs12799860	1.00[AFR][1000 genomes]
rs35176806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs71486349	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71486352	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042469	chr11:120799275-120846585	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541183	chr11:120799275-120846585	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120823600-120841600	Weak transcription	Brain Substantia Nigra	brain
2	chr11:120824000-120838600	Weak transcription	Brain Cingulate Gyrus	brain
3	chr11:120824000-120845200	Weak transcription	Brain Inferior Temporal Lobe	brain
4	chr11:120829000-120845200	Weak transcription	Fetal Brain Male	brain
5	chr11:120833400-120856400	Weak transcription	Ovary	ovary
6	chr11:120834400-120839200	Weak transcription	Fetal Lung	lung
7	chr11:120835400-120845200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
8	chr11:120836800-120856400	Weak transcription	Brain Anterior Caudate	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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