Variant report

Variant	rs71486349
Chromosome Location	chr11:120808303-120808304
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12785765	1.00[AFR][1000 genomes]
rs12797625	1.00[AFR][1000 genomes]
rs35176806	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs41297897	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs71486352	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1042469	chr11:120799275-120846585	Enhancers Weak transcription Bivalent Enhancer Flanking Active TSS Flanking Bivalent TSS/Enh Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	nsv541183	chr11:120799275-120846585	Flanking Bivalent TSS/Enh Bivalent Enhancer Enhancers Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120800400-120808400	Weak transcription	Brain Anterior Caudate	brain
2	chr11:120800600-120815200	Weak transcription	Brain Hippocampus Middle	brain
3	chr11:120801000-120811400	Weak transcription	Fetal Lung	lung
4	chr11:120802200-120823200	Weak transcription	Ovary	ovary
5	chr11:120803600-120808400	Weak transcription	iPS-18 Cell Line	embryonic stem cell
6	chr11:120805400-120809200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
7	chr11:120805400-120809800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr11:120808200-120808400	Bivalent Enhancer	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr11:120808200-120808600	Enhancers	Brain Cingulate Gyrus	brain
10	chr11:120808200-120808600	Enhancers	Brain Inferior Temporal Lobe	brain
11	chr11:120808200-120808600	Enhancers	Brain Substantia Nigra	brain

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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