Variant report

Variant	rs12797827
Chromosome Location	chr11:76645699-76645700
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs10899314	0.85[ASN][1000 genomes]
rs11237030	0.85[ASN][1000 genomes]
rs11606467	0.85[ASN][1000 genomes]
rs12223477	0.85[ASN][1000 genomes]
rs2048954	0.80[ASN][1000 genomes]
rs3740768	0.83[ASN][1000 genomes]
rs55798841	0.83[ASN][1000 genomes]
rs56129156	0.83[ASN][1000 genomes]
rs56789915	0.85[ASN][1000 genomes]
rs61900090	0.92[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:56 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76631400-76645800	Weak transcription	Fetal Lung	lung
2	chr11:76631400-76646000	Weak transcription	HUVEC	blood vessel
3	chr11:76631400-76649000	Weak transcription	Aorta	Aorta
4	chr11:76631400-76655000	Weak transcription	Primary B cells from cord blood	blood
5	chr11:76631400-76688400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr11:76631600-76645800	Weak transcription	Brain Anterior Caudate	brain
7	chr11:76631600-76645800	Weak transcription	Brain Inferior Temporal Lobe	brain
8	chr11:76631600-76645800	Weak transcription	Brain Substantia Nigra	brain
9	chr11:76631600-76646000	Weak transcription	Primary T cells from cord blood	blood
10	chr11:76631600-76646400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr11:76631600-76646600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr11:76631600-76646600	Weak transcription	Brain Cingulate Gyrus	brain
13	chr11:76631600-76657000	Weak transcription	Sigmoid Colon	Sigmoid Colon
14	chr11:76631600-76670200	Weak transcription	Left Ventricle	heart
15	chr11:76631600-76671600	Weak transcription	Ovary	ovary
16	chr11:76632200-76645800	Weak transcription	Duodenum Mucosa	Duodenum
17	chr11:76633400-76645800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
18	chr11:76635200-76646400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr11:76638800-76651600	Weak transcription	Colonic Mucosa	Colon
20	chr11:76641400-76646600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
21	chr11:76642000-76646200	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr11:76642400-76645800	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr11:76643000-76646400	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
24	chr11:76643000-76647200	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
25	chr11:76643200-76647200	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
26	chr11:76643800-76645800	Weak transcription	Primary neutrophils fromperipheralblood	blood
27	chr11:76644000-76666400	Weak transcription	NHEK	skin
28	chr11:76644200-76645800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
29	chr11:76644200-76645800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:76644200-76645800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr11:76644200-76645800	Weak transcription	A549	lung
32	chr11:76644200-76646600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
33	chr11:76644200-76646600	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr11:76644200-76653000	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr11:76644400-76646600	Weak transcription	Brain Angular Gyrus	brain
36	chr11:76644800-76646000	ZNF genes & repeats	Primary monocytes fromperipheralblood	blood
37	chr11:76645000-76645800	ZNF genes & repeats	Fetal Stomach	stomach
38	chr11:76645000-76647200	ZNF genes & repeats	H1 Cell Line	embryonic stem cell
39	chr11:76645400-76646000	ZNF genes & repeats	H9 Derived Neuron Cultured Cells	ES cell derived
40	chr11:76645400-76646200	ZNF genes & repeats	Primary mononuclear cells fromperipheralblood	Blood
41	chr11:76645400-76647600	ZNF genes & repeats	Primary hematopoietic stem cells G-CSF-mobilized Male	--
42	chr11:76645600-76645800	ZNF genes & repeats	H1 Derived Mesenchymal Stem Cells	ES cell derived
43	chr11:76645600-76645800	ZNF genes & repeats	Esophagus	oesophagus
44	chr11:76645600-76646000	ZNF genes & repeats	Primary Natural Killer cells fromperipheralblood	blood
45	chr11:76645600-76646000	ZNF genes & repeats	HMEC	breast
46	chr11:76645600-76646600	ZNF genes & repeats	Monocytes-CD14+_RO01746	blood
47	chr11:76645600-76647000	ZNF genes & repeats	Primary B cells from peripheral blood	blood
48	chr11:76645600-76647000	ZNF genes & repeats	Cortex derived primary cultured neurospheres	brain
49	chr11:76645600-76647000	ZNF genes & repeats	Liver	Liver
50	chr11:76645600-76647200	ZNF genes & repeats	Breast Myoepithelial Primary Cells	Breast

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