Variant report

Variant	rs10899314
Chromosome Location	chr11:76631298-76631299
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:23)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:23 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76630352..76631643-chr11:76756099..76757719,29	MCF-7	breast:
2	chr11:76629872..76631321-chr11:76756709..76758148,6	K562	blood:
3	chr11:76517508..76519118-chr11:76629396..76631998,9	MCF-7	breast:
4	chr11:76445248..76448071-chr11:76628717..76631883,4	MCF-7	breast:
5	chr11:76630452..76631634-chr11:76749942..76751223,14	MCF-7	breast:
6	chr11:76630886..76632771-chr11:76660350..76662030,2	K562	blood:
7	chr11:76630631..76631525-chr11:76751691..76752659,7	MCF-7	breast:
8	chr11:76630144..76633520-chr11:76634878..76637709,3	K562	blood:
9	chr11:76432571..76433259-chr11:76630324..76631367,3	MCF-7	breast:
10	chr11:76631123..76631684-chr5:68596557..68597057,2	MCF-7	breast:
11	chr11:76546720..76547429-chr11:76631285..76632052,2	K562	blood:
12	chr11:76630811..76631564-chr20:49404499..49405133,2	MCF-7	breast:
13	chr11:76493213..76495963-chr11:76631032..76633538,2	MCF-7	breast:
14	chr11:76630720..76631502-chr11:76757944..76758687,2	MCF-7	breast:
15	chr11:76518111..76519175-chr11:76629549..76632027,10	K562	blood:
16	chr11:76630107..76631528-chr11:76750174..76751202,8	MCF-7	breast:
17	chr10:26446870..26447370-chr11:76630990..76631616,2	MCF-7	breast:
18	chr11:76631230..76632979-chr11:76654933..76656513,2	K562	blood:
19	chr11:76629857..76631654-chr11:76756070..76758105,23	MCF-7	breast:
20	chr11:76630519..76631417-chr11:76751967..76752554,2	MCF-7	breast:
21	chr11:76630803..76631497-chr11:76645979..76646483,2	MCF-7	breast:
22	chr11:76570391..76573422-chr11:76629389..76632436,3	MCF-7	breast:
23	chr11:76630930..76631524-chr11:76801847..76802441,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000198488	Chromatin interaction
ENSG00000255100	Chromatin interaction
ENSG00000078124	Chromatin interaction
ENSG00000182704	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs10899293	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11236997	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11237030	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11602065	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11605656	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs11606034	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11606467	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12223477	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797827	0.85[ASN][1000 genomes]
rs17812687	0.80[AFR][1000 genomes]
rs1945084	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs1945085	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2048954	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2187499	0.96[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs2279518	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2372387	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3740766	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs3740768	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4016126	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs4944130	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4945128	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.80[AFR][1000 genomes]
rs55743360	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55798841	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55977032	0.80[AFR][1000 genomes]
rs56129156	0.82[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56789915	0.88[AFR][1000 genomes];0.82[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61895512	0.96[AMR][1000 genomes];0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61895513	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61900089	0.87[AFR][1000 genomes]
rs61900090	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61900119	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs61900120	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs7115729	0.95[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7118398	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:106 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76618200-76637600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:76627400-76631600	Enhancers	K562	blood
3	chr11:76628000-76637600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr11:76629000-76631400	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr11:76629400-76631600	Enhancers	Brain Substantia Nigra	brain
6	chr11:76629800-76631400	Enhancers	HUVEC	blood vessel
7	chr11:76629800-76631600	Enhancers	Adipose Nuclei	Adipose
8	chr11:76630000-76631400	Enhancers	iPS-15b Cell Line	embryonic stem cell
9	chr11:76630000-76631400	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
10	chr11:76630000-76631400	Enhancers	Fetal Lung	lung
11	chr11:76630000-76631400	Enhancers	Monocytes-CD14+_RO01746	blood
12	chr11:76630000-76631600	Enhancers	Primary B cells from peripheral blood	blood
13	chr11:76630000-76631600	Enhancers	Cortex derived primary cultured neurospheres	brain
14	chr11:76630000-76631600	Enhancers	Brain Hippocampus Middle	brain
15	chr11:76630000-76631600	Enhancers	Colon Smooth Muscle	Colon
16	chr11:76630000-76633400	Enhancers	Stomach Mucosa	stomach
17	chr11:76630200-76631400	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
18	chr11:76630200-76631600	Enhancers	NHEK	skin
19	chr11:76630200-76643400	Weak transcription	HUES64 Cell Line	embryonic stem cell
20	chr11:76630200-76645600	Weak transcription	Fetal Brain Female	brain
21	chr11:76630400-76631400	Enhancers	HUES48 Cell Line	embryonic stem cell
22	chr11:76630400-76631400	Enhancers	iPS-18 Cell Line	embryonic stem cell
23	chr11:76630400-76631600	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr11:76630400-76631600	Enhancers	Primary T killer memory cells from peripheral blood	blood
25	chr11:76630400-76631600	Enhancers	Brain Anterior Caudate	brain
26	chr11:76630600-76643200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
27	chr11:76630800-76631400	Flanking Active TSS	Primary T killer naive cells fromperipheralblood	blood
28	chr11:76630800-76631400	Enhancers	Fetal Stomach	stomach
29	chr11:76630800-76631600	Enhancers	Brain Inferior Temporal Lobe	brain
30	chr11:76630800-76631600	Enhancers	HepG2	liver
31	chr11:76631000-76631400	Enhancers	Primary neutrophils fromperipheralblood	blood
32	chr11:76631000-76631400	Flanking Active TSS	Primary T cells from cord blood	blood
33	chr11:76631000-76631400	Flanking Active TSS	Primary T cells fromperipheralblood	blood
34	chr11:76631000-76631400	Flanking Active TSS	Primary T helper naive cells fromperipheralblood	blood
35	chr11:76631000-76631400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
36	chr11:76631000-76631400	Flanking Active TSS	Primary T helper cells PMA-I stimulated	--
37	chr11:76631000-76631400	Flanking Active TSS	Primary T helper 17 cells PMA-I stimulated	--
38	chr11:76631000-76631400	Flanking Active TSS	Primary T regulatory cells fromperipheralblood	blood
39	chr11:76631000-76631400	Active TSS	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr11:76631000-76631400	Flanking Active TSS	Primary Natural Killer cells fromperipheralblood	blood
41	chr11:76631000-76631400	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
42	chr11:76631000-76631400	Active TSS	Foreskin Melanocyte Primary Cells skin01	Skin
43	chr11:76631000-76631400	Flanking Active TSS	Fetal Kidney	kidney
44	chr11:76631000-76631400	Active TSS	Stomach Smooth Muscle	stomach
45	chr11:76631000-76631400	Enhancers	Thymus	Thymus
46	chr11:76631000-76631600	Enhancers	Breast Myoepithelial Primary Cells	Breast
47	chr11:76631000-76631600	Active TSS	Primary hematopoietic stem cells	blood
48	chr11:76631000-76631600	Flanking Active TSS	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
49	chr11:76631000-76631600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
50	chr11:76631000-76631600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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