Variant report

Variant	rs10899293
Chromosome Location	chr11:76566755-76566756
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76551001..76553533-chr11:76566118..76568951,2	K562	blood:
2	chr11:76566306..76569293-chr11:76569398..76571273,2	K562	blood:
3	chr11:76564296..76568094-chr11:76569761..76574800,8	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs10899314	0.96[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs11236997	1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11602065	1.00[AMR][1000 genomes];0.92[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11606034	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11606467	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12223477	0.96[AMR][1000 genomes];0.87[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2048954	0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs2279518	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2372387	0.99[AMR][1000 genomes];0.90[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55743360	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs61895512	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs61895513	0.99[AMR][1000 genomes];0.93[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61900090	0.83[AMR][1000 genomes]
rs7115729	0.99[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:25 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76549600-76570800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr11:76549800-76572000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr11:76562000-76567200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr11:76562000-76571200	Weak transcription	Adipose Nuclei	Adipose
5	chr11:76562000-76571400	Weak transcription	Skeletal Muscle Female	skeletal muscle
6	chr11:76562200-76570600	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr11:76562200-76571000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
8	chr11:76562400-76569800	Weak transcription	Placenta	Placenta
9	chr11:76562600-76567400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:76563400-76566800	Weak transcription	GM12878-XiMat	blood
11	chr11:76564000-76567400	Weak transcription	Primary neutrophils fromperipheralblood	blood
12	chr11:76565200-76568200	Enhancers	Primary hematopoietic stem cells short term culture	blood
13	chr11:76565400-76571400	Enhancers	Primary monocytes fromperipheralblood	blood
14	chr11:76565600-76566800	Enhancers	Monocytes-CD14+_RO01746	blood
15	chr11:76566000-76567400	Enhancers	Primary hematopoietic stem cells	blood
16	chr11:76566000-76568600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
17	chr11:76566000-76569000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr11:76566000-76571000	Weak transcription	K562	blood
19	chr11:76566000-76571200	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
20	chr11:76566200-76571000	Weak transcription	NHEK	skin
21	chr11:76566400-76567200	Enhancers	Lung	lung
22	chr11:76566600-76567000	Weak transcription	HMEC	breast
23	chr11:76566600-76569800	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
24	chr11:76566600-76571200	Weak transcription	Thymus	Thymus
25	chr11:76566600-76571400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin

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