Variant report

Variant	rs11606467
Chromosome Location	chr11:76631879-76631880
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:9)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:9 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr11:76517508..76519118-chr11:76629396..76631998,9	MCF-7	breast:
2	chr11:76445248..76448071-chr11:76628717..76631883,4	MCF-7	breast:
3	chr11:76630886..76632771-chr11:76660350..76662030,2	K562	blood:
4	chr11:76630144..76633520-chr11:76634878..76637709,3	K562	blood:
5	chr11:76546720..76547429-chr11:76631285..76632052,2	K562	blood:
6	chr11:76493213..76495963-chr11:76631032..76633538,2	MCF-7	breast:
7	chr11:76518111..76519175-chr11:76629549..76632027,10	K562	blood:
8	chr11:76631230..76632979-chr11:76654933..76656513,2	K562	blood:
9	chr11:76570391..76573422-chr11:76629389..76632436,3	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction
ENSG00000182704	Chromatin interaction
ENSG00000255100	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:31)

rs_ID	r²[population]
rs10899293	0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs10899314	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11236997	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11237030	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11602065	0.96[AMR][1000 genomes];0.93[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11605656	0.88[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs11606034	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12223477	0.87[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12797827	0.85[ASN][1000 genomes]
rs17812687	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs2048954	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2187499	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2279518	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2372387	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3740766	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs3740768	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs4944130	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4945128	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs55743360	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55798841	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs55977032	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs56129156	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56789915	0.88[AFR][1000 genomes];0.84[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs61895512	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61895513	0.95[AMR][1000 genomes];0.92[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61900089	0.87[AFR][1000 genomes]
rs61900090	0.86[AMR][1000 genomes];0.90[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs61900119	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs61900120	0.80[AFR][1000 genomes];0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs7115729	0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs7118398	0.80[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:64 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76618200-76637600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
2	chr11:76628000-76637600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
3	chr11:76630000-76633400	Enhancers	Stomach Mucosa	stomach
4	chr11:76630200-76643400	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr11:76630200-76645600	Weak transcription	Fetal Brain Female	brain
6	chr11:76630600-76643200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
7	chr11:76631200-76632000	Enhancers	Fetal Intestine Large	intestine
8	chr11:76631200-76632000	Enhancers	Pancreas	Pancrea
9	chr11:76631400-76632000	Enhancers	Liver	Liver
10	chr11:76631400-76632200	Weak transcription	Muscle Satellite Cultured Cells	--
11	chr11:76631400-76633000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
12	chr11:76631400-76637400	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr11:76631400-76637600	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
14	chr11:76631400-76643200	Weak transcription	Primary neutrophils fromperipheralblood	blood
15	chr11:76631400-76643400	Weak transcription	HUES48 Cell Line	embryonic stem cell
16	chr11:76631400-76643600	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr11:76631400-76644600	Weak transcription	Small Intestine	intestine
18	chr11:76631400-76644800	Weak transcription	Fetal Muscle Trunk	muscle
19	chr11:76631400-76645000	Weak transcription	Fetal Stomach	stomach
20	chr11:76631400-76645600	Weak transcription	Esophagus	oesophagus
21	chr11:76631400-76645600	Weak transcription	Placenta	Placenta
22	chr11:76631400-76645600	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:76631400-76645800	Weak transcription	Fetal Lung	lung
24	chr11:76631400-76646000	Weak transcription	HUVEC	blood vessel
25	chr11:76631400-76649000	Weak transcription	Aorta	Aorta
26	chr11:76631400-76655000	Weak transcription	Primary B cells from cord blood	blood
27	chr11:76631400-76688400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr11:76631600-76632200	Enhancers	Duodenum Mucosa	Duodenum
29	chr11:76631600-76633000	Enhancers	Fetal Intestine Small	intestine
30	chr11:76631600-76633000	Active TSS	Rectal Mucosa Donor 29	rectum
31	chr11:76631600-76634000	Weak transcription	Skeletal Muscle Female	skeletal muscle
32	chr11:76631600-76637600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
33	chr11:76631600-76637600	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr11:76631600-76643000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
35	chr11:76631600-76643000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
36	chr11:76631600-76643000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
37	chr11:76631600-76643000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr11:76631600-76643000	Weak transcription	Adipose Nuclei	Adipose
39	chr11:76631600-76643200	Weak transcription	iPS-20b Cell Line	embryonic stem cell
40	chr11:76631600-76643200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
41	chr11:76631600-76643200	Weak transcription	Cortex derived primary cultured neurospheres	brain
42	chr11:76631600-76643200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
43	chr11:76631600-76643200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
44	chr11:76631600-76643200	Weak transcription	HMEC	breast
45	chr11:76631600-76643400	Weak transcription	Dnd41	blood
46	chr11:76631600-76643600	Weak transcription	A549	lung
47	chr11:76631600-76643600	Weak transcription	NHDF-Ad	bronchial
48	chr11:76631600-76643800	Weak transcription	NHEK	skin
49	chr11:76631600-76644800	Weak transcription	Primary T helper cells PMA-I stimulated	--
50	chr11:76631600-76645000	Weak transcription	Primary B cells from peripheral blood	blood

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