Variant report

Variant	rs55977032
Chromosome Location	chr11:76699555-76699556
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76691402..76695270-chr11:76696975..76699875,3	K562	blood:
2	chr11:76699145..76701750-chr11:76703493..76705984,2	K562	blood:
3	chr11:76691341..76694336-chr11:76696975..76699945,2	K562	blood:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10899314	0.80[AFR][1000 genomes]
rs11236997	0.84[AFR][1000 genomes]
rs11237030	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11602065	0.81[AFR][1000 genomes]
rs11605656	0.92[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11606034	0.84[AFR][1000 genomes]
rs11606467	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs12223477	0.81[EUR][1000 genomes]
rs17812687	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1945084	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1945085	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs2048954	0.80[AFR][1000 genomes]
rs2187499	1.00[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs2372387	0.80[AFR][1000 genomes]
rs3740766	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740768	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs3862808	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4016126	0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4944130	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4944133	0.92[AFR][1000 genomes];0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4945128	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55743360	0.88[AFR][1000 genomes]
rs55798841	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56129156	0.91[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs56789915	0.92[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs61895513	0.80[AFR][1000 genomes]
rs61900090	0.80[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs61900119	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61900120	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7118398	1.00[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv519700	chr11:76637651-76709407	ZNF genes & repeats Weak transcription Strong transcription Enhancers Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
2	nsv1042924	chr11:76659477-76709407	Weak transcription Enhancers Strong transcription ZNF genes & repeats Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1040833	chr11:76667160-76709407	Weak transcription Genic enhancers Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Bivalent Enhancer Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv396	chr11:76670116-76702745	Weak transcription ZNF genes & repeats Enhancers Strong transcription Genic enhancers Flanking Active TSS Active TSS Bivalent Enhancer	TF binding region Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	esv1802222	chr11:76683305-76709407	Weak transcription Enhancers Strong transcription Genic enhancers ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	n/a

No data

Chromatin state (count:67 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76660000-76710800	Weak transcription	Duodenum Smooth Muscle	Duodenum
2	chr11:76675000-76721800	Weak transcription	Stomach Smooth Muscle	stomach
3	chr11:76675000-76725600	Weak transcription	A549	lung
4	chr11:76675000-76729600	Weak transcription	Brain Angular Gyrus	brain
5	chr11:76683000-76736400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
6	chr11:76683200-76729200	Weak transcription	Brain Hippocampus Middle	brain
7	chr11:76683600-76720400	Weak transcription	Brain Cingulate Gyrus	brain
8	chr11:76683600-76728000	Weak transcription	Brain Anterior Caudate	brain
9	chr11:76688600-76710800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr11:76689200-76734600	Weak transcription	Liver	Liver
11	chr11:76689400-76700600	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr11:76689400-76700800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
13	chr11:76689600-76701200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
14	chr11:76689600-76717800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr11:76689600-76737000	Weak transcription	Pancreas	Pancrea
16	chr11:76689800-76704800	Weak transcription	Primary B cells from peripheral blood	blood
17	chr11:76689800-76708400	Weak transcription	Primary T cells from cord blood	blood
18	chr11:76689800-76731400	Weak transcription	Ovary	ovary
19	chr11:76690000-76699800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
20	chr11:76690000-76706000	Weak transcription	Gastric	stomach
21	chr11:76690000-76709200	Weak transcription	HUES64 Cell Line	embryonic stem cell
22	chr11:76690000-76718000	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
23	chr11:76690000-76718600	Weak transcription	Primary B cells from cord blood	blood
24	chr11:76690000-76722000	Weak transcription	Aorta	Aorta
25	chr11:76690000-76723800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
26	chr11:76690000-76735800	Weak transcription	Rectal Smooth Muscle	rectum
27	chr11:76690200-76704000	Weak transcription	Lung	lung
28	chr11:76690200-76704800	Weak transcription	Fetal Stomach	stomach
29	chr11:76690200-76709200	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
30	chr11:76690200-76710000	Weak transcription	Cortex derived primary cultured neurospheres	brain
31	chr11:76690200-76710600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
32	chr11:76690200-76722000	Weak transcription	Spleen	Spleen
33	chr11:76690200-76729000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr11:76690200-76736800	Weak transcription	Skeletal Muscle Male	skeletal muscle
35	chr11:76690400-76717200	Weak transcription	Primary hematopoietic stem cells	blood
36	chr11:76690400-76734600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
37	chr11:76691600-76701200	Weak transcription	Colonic Mucosa	Colon
38	chr11:76692600-76713000	Strong transcription	Primary monocytes fromperipheralblood	blood
39	chr11:76693800-76734800	Strong transcription	Monocytes-CD14+_RO01746	blood
40	chr11:76694000-76738600	Weak transcription	HSMMtube	muscle
41	chr11:76696000-76702200	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
42	chr11:76696000-76711200	Strong transcription	Adipose Nuclei	Adipose
43	chr11:76696200-76708400	Weak transcription	HMEC	breast
44	chr11:76696200-76738000	Weak transcription	Skeletal Muscle Female	skeletal muscle
45	chr11:76696400-76699600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr11:76696400-76701800	Weak transcription	Duodenum Mucosa	Duodenum
47	chr11:76696400-76702000	Weak transcription	Rectal Mucosa Donor 31	rectum
48	chr11:76696400-76706200	Weak transcription	Sigmoid Colon	Sigmoid Colon
49	chr11:76696400-76714800	Weak transcription	NHEK	skin
50	chr11:76696400-76726600	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived

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