Variant report

Variant	rs1945084
Chromosome Location	chr11:76738129-76738130
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:76737481..76740047-chr11:76746151..76748050,2	K562	blood:
2	chr11:76730364..76733254-chr11:76737116..76739128,2	MCF-7	breast:
3	chr11:76737371..76740086-chr11:76741474..76743878,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000078124	Chromatin interaction

Extended variants
information (count: 25 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs10899314	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11237030	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11602065	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs11605656	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12223477	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs17812687	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs1945085	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2048954	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs2187499	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.94[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2279518	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap]
rs3740766	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs3740768	0.96[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs3862808	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs4016126	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4944130	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs4944133	0.88[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs4945128	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55798841	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55977032	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs56129156	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56789915	0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs61900090	0.80[EUR][1000 genomes]
rs61900119	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs61900120	0.80[AFR][1000 genomes];0.92[AMR][1000 genomes];0.92[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7118398	0.80[AFR][1000 genomes];0.90[AMR][1000 genomes];0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76694000-76738600	Weak transcription	HSMMtube	muscle
2	chr11:76701200-76738400	Weak transcription	Brain Inferior Temporal Lobe	brain
3	chr11:76716400-76739800	Weak transcription	Colonic Mucosa	Colon
4	chr11:76722600-76740400	Weak transcription	Lung	lung
5	chr11:76722600-76741800	Weak transcription	Aorta	Aorta
6	chr11:76722600-76741800	Weak transcription	Gastric	stomach
7	chr11:76727200-76740400	Weak transcription	Esophagus	oesophagus
8	chr11:76730200-76738400	Weak transcription	Brain Hippocampus Middle	brain
9	chr11:76730200-76738600	Weak transcription	Brain Angular Gyrus	brain
10	chr11:76731800-76738400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr11:76732200-76738600	Weak transcription	NHEK	skin
12	chr11:76732200-76741400	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr11:76732200-76746600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
14	chr11:76732400-76740000	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr11:76732600-76738400	Weak transcription	HMEC	breast
16	chr11:76733000-76746200	Weak transcription	Hela-S3	cervix
17	chr11:76733200-76739200	Weak transcription	Rectal Mucosa Donor 29	rectum
18	chr11:76733400-76738400	Weak transcription	Fetal Lung	lung
19	chr11:76733600-76738400	Weak transcription	Left Ventricle	heart
20	chr11:76733600-76738600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr11:76733600-76739400	Weak transcription	Adipose Nuclei	Adipose
22	chr11:76733800-76738600	Weak transcription	Rectal Mucosa Donor 31	rectum
23	chr11:76734800-76746400	Weak transcription	Primary monocytes fromperipheralblood	blood
24	chr11:76735400-76739000	Enhancers	Fetal Intestine Small	intestine
25	chr11:76736800-76739200	Enhancers	Fetal Heart	heart
26	chr11:76737200-76740800	Weak transcription	Duodenum Mucosa	Duodenum
27	chr11:76737400-76738200	Enhancers	Skeletal Muscle Male	skeletal muscle
28	chr11:76737600-76740800	Weak transcription	Fetal Intestine Large	intestine
29	chr11:76737800-76738200	Weak transcription	A549	lung
30	chr11:76738000-76738200	Enhancers	HUES64 Cell Line	embryonic stem cell
31	chr11:76738000-76738600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr11:76738000-76738800	Enhancers	Fetal Muscle Leg	muscle
33	chr11:76738000-76738800	Enhancers	Skeletal Muscle Female	skeletal muscle
34	chr11:76738000-76739800	Enhancers	Stomach Mucosa	stomach

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