Variant report

Variant	rs55743360
Chromosome Location	chr11:76607564-76607565
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:76605761..76607881-chr11:76609274..76610952,2	MCF-7	breast:

Extended variants
information (count: 31 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:30)

rs_ID	r²[population]
rs10899293	1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs10899314	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs11236997	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11237030	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11602065	0.85[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11605656	0.80[AFR][1000 genomes]
rs11606034	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11606467	0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12223477	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs17812687	0.88[AFR][1000 genomes]
rs2048954	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2187499	0.88[AFR][1000 genomes]
rs2279518	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs2372387	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740766	0.88[AFR][1000 genomes]
rs3740768	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs4944130	0.88[AFR][1000 genomes];0.80[EUR][1000 genomes]
rs4944133	0.80[AFR][1000 genomes]
rs4945128	0.88[AFR][1000 genomes]
rs55798841	0.81[EUR][1000 genomes]
rs55977032	0.88[AFR][1000 genomes]
rs56129156	0.81[EUR][1000 genomes]
rs56789915	0.80[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs61895512	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61895513	0.84[AFR][1000 genomes];0.99[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs61900090	0.83[AMR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs61900119	0.88[AFR][1000 genomes]
rs61900120	0.88[AFR][1000 genomes]
rs7115729	0.99[AMR][1000 genomes];0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7118398	0.88[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv518920	chr11:76573016-76637651	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	7 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:76581200-76613400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr11:76596800-76614600	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr11:76597000-76631000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
4	chr11:76597400-76611200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
5	chr11:76597600-76613600	Weak transcription	NHEK	skin
6	chr11:76597800-76614200	Weak transcription	HMEC	breast
7	chr11:76600200-76613600	Weak transcription	Rectal Mucosa Donor 31	rectum
8	chr11:76600800-76616800	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr11:76600800-76617200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr11:76601200-76609000	Weak transcription	Fetal Intestine Small	intestine
11	chr11:76601400-76617000	Weak transcription	Primary monocytes fromperipheralblood	blood
12	chr11:76603000-76611800	Weak transcription	Brain Angular Gyrus	brain
13	chr11:76603000-76612000	Weak transcription	K562	blood
14	chr11:76603000-76613400	Weak transcription	HUES48 Cell Line	embryonic stem cell
15	chr11:76604400-76609200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
16	chr11:76604400-76613000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
17	chr11:76605600-76608600	Weak transcription	Monocytes-CD14+_RO01746	blood
18	chr11:76606000-76613800	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
19	chr11:76606600-76610200	Weak transcription	Brain Substantia Nigra	brain
20	chr11:76606600-76610400	Weak transcription	Brain Hippocampus Middle	brain
21	chr11:76606600-76611400	Weak transcription	Brain Cingulate Gyrus	brain
22	chr11:76606800-76612000	Weak transcription	Brain Anterior Caudate	brain

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