Variant report

Variant	rs12800065
Chromosome Location	chr4:76341650-76341651
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 67 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10767979	0.88[ASN][1000 genomes]
rs10836030	0.85[EUR][1000 genomes]
rs10836031	0.92[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11032081	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11032089	0.88[ASN][1000 genomes]
rs11032091	0.89[ASN][1000 genomes]
rs11032095	0.93[ASN][1000 genomes]
rs11032096	0.93[ASN][1000 genomes]
rs11032097	0.99[ASN][1000 genomes]
rs11032099	0.90[ASN][1000 genomes]
rs11032103	0.90[ASN][1000 genomes]
rs11032107	0.88[ASN][1000 genomes]
rs11032108	0.89[ASN][1000 genomes]
rs11032109	0.89[ASN][1000 genomes]
rs11032119	0.87[ASN][1000 genomes]
rs11032151	0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs11032167	0.94[EUR][1000 genomes]
rs11032168	0.85[EUR][1000 genomes]
rs11032169	0.83[EUR][1000 genomes]
rs11032174	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11032177	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11032182	0.94[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs11032183	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs11524842	0.85[ASN][1000 genomes]
rs11825233	0.88[ASN][1000 genomes]
rs11825252	0.88[ASN][1000 genomes]
rs11825803	0.90[ASN][1000 genomes]
rs11826968	0.88[EUR][1000 genomes]
rs11827574	0.87[ASN][1000 genomes]
rs12295815	0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12789338	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12789880	0.94[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs12790052	0.92[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12793225	0.86[ASN][1000 genomes]
rs12806300	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs12806348	0.87[ASN][1000 genomes]
rs12806463	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12806701	0.83[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12808050	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1426378	0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1895913	0.88[ASN][1000 genomes]
rs2599587	0.83[ASN][1000 genomes]
rs2599595	0.83[ASN][1000 genomes]
rs2599596	0.87[ASN][1000 genomes]
rs28823401	0.89[ASN][1000 genomes]
rs34504032	0.85[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs34666651	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs34884336	0.85[ASN][1000 genomes]
rs35057395	0.80[EUR][1000 genomes]
rs35225257	0.88[ASN][1000 genomes]
rs35226211	0.88[ASN][1000 genomes]
rs35307865	0.89[ASN][1000 genomes]
rs35533998	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs35682743	0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs35747644	0.88[ASN][1000 genomes]
rs35831442	0.82[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4495886	0.81[EUR][1000 genomes]
rs4495887	0.94[EUR][1000 genomes]
rs5030768	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs71478797	0.83[EUR][1000 genomes]
rs926101	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv594687	chr4:76154064-76502748	Weak transcription ZNF genes & repeats Active TSS Flanking Active TSS Enhancers Strong transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases
2	nsv998511	chr4:76184807-76398377	Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent Enhancer Active TSS Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
3	esv2763368	chr4:76190070-76387413	ZNF genes & repeats Enhancers Weak transcription Active TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
4	nsv461557	chr4:76212995-76363477	Weak transcription ZNF genes & repeats Enhancers Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv594688	chr4:76212995-76363477	Enhancers Weak transcription ZNF genes & repeats Bivalent Enhancer Flanking Active TSS Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	nsv534570	chr4:76214619-76498362	ZNF genes & repeats Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	27 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:76340600-76343000	Weak transcription	Fetal Heart	heart

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