Variant report

Variant	rs5030768
Chromosome Location	chr11:4411819-4411820
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:61)

rs_ID	r²[population]
rs10767979	0.96[ASN][1000 genomes]
rs10836030	0.86[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs10836031	0.92[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11032081	0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11032089	0.96[ASN][1000 genomes]
rs11032091	0.93[ASN][1000 genomes]
rs11032095	0.88[ASN][1000 genomes]
rs11032096	0.88[ASN][1000 genomes]
rs11032097	0.85[ASN][1000 genomes]
rs11032099	0.94[ASN][1000 genomes]
rs11032103	0.94[ASN][1000 genomes]
rs11032107	0.96[ASN][1000 genomes]
rs11032108	0.92[ASN][1000 genomes]
rs11032109	0.92[ASN][1000 genomes]
rs11032119	0.96[ASN][1000 genomes]
rs11032151	0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs11032167	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11032168	0.85[EUR][1000 genomes]
rs11032169	0.83[EUR][1000 genomes]
rs11032174	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11032177	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11032182	0.94[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs11032183	0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs11524842	0.94[ASN][1000 genomes]
rs11825233	0.96[ASN][1000 genomes]
rs11825252	0.96[ASN][1000 genomes]
rs11825803	0.94[ASN][1000 genomes]
rs11826968	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs11827574	0.96[ASN][1000 genomes]
rs12295815	0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12789338	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12789880	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12790052	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12793225	0.95[ASN][1000 genomes]
rs12800065	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12806300	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12806348	0.96[ASN][1000 genomes]
rs12806463	0.90[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12806701	0.83[EUR][1000 genomes]
rs12808050	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1426378	0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1895913	0.96[ASN][1000 genomes]
rs2599587	0.95[ASN][1000 genomes]
rs2599595	0.92[ASN][1000 genomes]
rs2599596	0.96[ASN][1000 genomes]
rs28823401	0.93[ASN][1000 genomes]
rs34504032	0.85[EUR][1000 genomes]
rs34666651	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs34884336	0.94[ASN][1000 genomes]
rs35057395	0.81[EUR][1000 genomes]
rs35225257	0.96[ASN][1000 genomes]
rs35226211	0.96[ASN][1000 genomes]
rs35307865	0.92[ASN][1000 genomes]
rs35533998	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs35682743	0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs35747644	0.96[ASN][1000 genomes]
rs35831442	0.82[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4495886	0.82[EUR][1000 genomes]
rs4495887	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs71478797	0.83[EUR][1000 genomes]
rs926101	0.92[AFR][1000 genomes];0.95[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:35 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758253	chr11:4055945-4510188	Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
2	esv2759797	chr11:4055945-4510188	Active TSS Flanking Active TSS Strong transcription Weak transcription Enhancers ZNF genes & repeats Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
3	nsv428248	chr11:4055945-4510188	Weak transcription Strong transcription Flanking Active TSS Genic enhancers Enhancers Bivalent/Poised TSS Active TSS Bivalent Enhancer ZNF genes & repeats Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	38 gene(s)	inside rSNPs	diseases
4	nsv1041957	chr11:4213658-4470615	Flanking Active TSS Active TSS Genic enhancers Enhancers Weak transcription Strong transcription ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
5	nsv540913	chr11:4213658-4470615	Weak transcription Flanking Active TSS Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Strong transcription Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	16 gene(s)	inside rSNPs	diseases
6	esv1811486	chr11:4221216-4443039	Flanking Bivalent TSS/Enh Weak transcription Flanking Active TSS Enhancers Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
7	esv1814887	chr11:4221216-4510188	Strong transcription Weak transcription Bivalent/Poised TSS Enhancers Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
8	nsv427881	chr11:4221216-4510188	Enhancers Strong transcription ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	18 gene(s)	inside rSNPs	diseases
9	nsv1037093	chr11:4256117-4418201	Weak transcription Flanking Active TSS Active TSS Enhancers Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	10 gene(s)	inside rSNPs	diseases
10	nsv1053120	chr11:4272450-4465637	Weak transcription Enhancers Strong transcription Active TSS Genic enhancers Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
11	nsv832054	chr11:4290607-4481475	Weak transcription Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Strong transcription ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
12	nsv932141	chr11:4326065-4531854	Weak transcription Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	14 gene(s)	inside rSNPs	diseases
13	nsv469800	chr11:4333541-4474341	Active TSS ZNF genes & repeats Strong transcription Genic enhancers Enhancers Flanking Active TSS Weak transcription Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases
14	nsv896907	chr11:4367196-4443472	Strong transcription Active TSS ZNF genes & repeats Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
15	nsv896908	chr11:4367196-4552102	Enhancers Weak transcription Active TSS Flanking Active TSS ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
16	nsv896909	chr11:4377205-4443472	Enhancers Weak transcription Flanking Active TSS Active TSS Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
17	nsv896910	chr11:4377205-4455955	Active TSS Strong transcription Enhancers Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	7 gene(s)	inside rSNPs	diseases
18	nsv553156	chr11:4386183-4414873	Flanking Active TSS Enhancers Weak transcription Strong transcription Bivalent/Poised TSS Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
19	nsv553157	chr11:4387760-4413960	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
20	nsv553158	chr11:4387760-4415079	Strong transcription Flanking Active TSS Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
21	nsv1042099	chr11:4388448-4414072	Strong transcription Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
22	nsv540914	chr11:4388448-4414072	Weak transcription Enhancers Active TSS Flanking Active TSS Strong transcription Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
23	nsv1052376	chr11:4388448-4475303	Flanking Active TSS Strong transcription Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
24	nsv540915	chr11:4388448-4475303	Flanking Active TSS Weak transcription Strong transcription Genic enhancers Active TSS Enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
25	nsv1043803	chr11:4388448-4837042	Enhancers Active TSS Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Bivalent/Poised TSS Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
26	nsv540916	chr11:4388448-4837042	Flanking Active TSS Weak transcription Strong transcription Active TSS Enhancers ZNF genes & repeats Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	46 gene(s)	inside rSNPs	diseases
27	nsv553159	chr11:4389110-4599221	Enhancers Strong transcription Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
28	nsv1048224	chr11:4390227-4920324	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
29	nsv540917	chr11:4390227-4920324	Weak transcription Enhancers Flanking Active TSS Active TSS Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	53 gene(s)	inside rSNPs	diseases
30	nsv1039510	chr11:4393573-4465634	Active TSS Weak transcription Strong transcription Flanking Active TSS Enhancers Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
31	nsv540918	chr11:4393573-4465634	Strong transcription Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
32	nsv896911	chr11:4400801-4806872	Weak transcription Enhancers Active TSS Flanking Active TSS Genic enhancers Strong transcription Bivalent Enhancer Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	41 gene(s)	inside rSNPs	diseases
33	nsv553160	chr11:4404192-4589567	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
34	nsv553161	chr11:4404192-4589780	Weak transcription Enhancers Strong transcription ZNF genes & repeats Active TSS Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
35	nsv553162	chr11:4407725-4458967	Strong transcription Weak transcription Active TSS Enhancers Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:124 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:4403200-4412000	Strong transcription	Primary T cells from cord blood	blood
2	chr11:4403400-4414400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr11:4403600-4414000	Weak transcription	K562	blood
4	chr11:4403600-4414400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr11:4404000-4414000	Weak transcription	Fetal Kidney	kidney
6	chr11:4404200-4412000	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
7	chr11:4404400-4412400	Strong transcription	Primary neutrophils fromperipheralblood	blood
8	chr11:4404800-4412200	Strong transcription	Primary B cells from peripheral blood	blood
9	chr11:4404800-4412200	Strong transcription	Monocytes-CD14+_RO01746	blood
10	chr11:4404800-4414200	Weak transcription	Fetal Brain Male	brain
11	chr11:4405000-4412000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr11:4405000-4414400	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
13	chr11:4405200-4413200	Strong transcription	Primary hematopoietic stem cells	blood
14	chr11:4405200-4414200	Weak transcription	iPS-15b Cell Line	embryonic stem cell
15	chr11:4405400-4414000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
16	chr11:4406200-4414000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
17	chr11:4406200-4414000	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr11:4407400-4414000	Weak transcription	HSMMtube	muscle
19	chr11:4408000-4414000	Weak transcription	iPS-18 Cell Line	embryonic stem cell
20	chr11:4408000-4414000	Weak transcription	Brain Cingulate Gyrus	brain
21	chr11:4408200-4413800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr11:4409400-4414000	Weak transcription	NH-A	brain
23	chr11:4409800-4414000	Weak transcription	Brain Germinal Matrix	brain
24	chr11:4410000-4413800	Weak transcription	iPS-20b Cell Line	embryonic stem cell
25	chr11:4410000-4414000	Weak transcription	Psoas Muscle	Psoas
26	chr11:4410400-4412000	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
27	chr11:4410800-4414200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
28	chr11:4411000-4414000	Weak transcription	A549	lung
29	chr11:4411200-4413800	Weak transcription	Pancreatic Islets	Pancreatic Islet
30	chr11:4411200-4413800	Weak transcription	Fetal Lung	lung
31	chr11:4411200-4413800	Weak transcription	Stomach Mucosa	stomach
32	chr11:4411200-4414000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
33	chr11:4411200-4414000	Weak transcription	Fetal Heart	heart
34	chr11:4411200-4414000	Weak transcription	Placenta Amnion	Placenta Amnion
35	chr11:4411400-4414000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr11:4411400-4414000	Weak transcription	Primary B cells from cord blood	blood
37	chr11:4411400-4414000	Weak transcription	Muscle Satellite Cultured Cells	--
38	chr11:4411400-4414000	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr11:4411400-4414000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
40	chr11:4411400-4414000	Weak transcription	Brain Angular Gyrus	brain
41	chr11:4411400-4414000	Weak transcription	Brain Hippocampus Middle	brain
42	chr11:4411400-4414000	Weak transcription	NHDF-Ad	bronchial
43	chr11:4411600-4412000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
44	chr11:4411600-4412000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
45	chr11:4411600-4412000	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
46	chr11:4411600-4412800	Weak transcription	Sigmoid Colon	Sigmoid Colon
47	chr11:4411600-4413600	Weak transcription	GM12878-XiMat	blood
48	chr11:4411600-4413800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
49	chr11:4411600-4413800	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
50	chr11:4411600-4413800	Weak transcription	Adipose Nuclei	Adipose

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