Variant report

Variant	rs35533998
Chromosome Location	chr4:98320245-98320246
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 71 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:65)

rs_ID	r²[population]
rs10767979	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs10836030	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs10836031	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11032081	0.94[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11032089	0.86[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11032091	0.80[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs11032095	0.84[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11032096	0.81[AFR][1000 genomes];0.82[ASN][1000 genomes]
rs11032097	0.81[AFR][1000 genomes];0.84[ASN][1000 genomes]
rs11032099	0.82[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11032103	0.84[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11032107	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11032108	0.91[ASN][1000 genomes]
rs11032109	0.91[ASN][1000 genomes]
rs11032119	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11032151	0.91[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs11032167	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs11032168	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11032169	0.85[AFR][1000 genomes];0.98[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11032174	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11032177	0.83[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11032182	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs11032183	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11524842	0.87[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs11529923	0.89[AMR][1000 genomes]
rs11825233	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11825252	0.85[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs11825803	0.81[AFR][1000 genomes];0.93[ASN][1000 genomes]
rs11826968	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11827574	0.89[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12295815	0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12789338	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12789880	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12790052	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12793225	0.83[AFR][1000 genomes];0.89[ASN][1000 genomes]
rs12800065	0.94[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12806300	0.94[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12806348	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs12806463	0.83[AFR][1000 genomes];0.98[AMR][1000 genomes];0.96[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12806701	0.93[AMR][1000 genomes];0.86[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs12808050	0.89[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs1426378	0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs1895913	0.81[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs2599587	0.86[ASN][1000 genomes]
rs2599595	0.87[AFR][1000 genomes];0.86[ASN][1000 genomes]
rs2599596	0.87[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs28823401	0.88[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs2898958	0.87[AFR][1000 genomes];0.85[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs34504032	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.86[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs34598381	0.91[AMR][1000 genomes]
rs34666651	0.90[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs34884336	0.84[AFR][1000 genomes];0.88[ASN][1000 genomes]
rs35057395	0.91[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs35225257	0.82[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs35226211	0.84[AFR][1000 genomes];0.90[ASN][1000 genomes]
rs35307865	0.91[ASN][1000 genomes]
rs35682743	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs35747644	0.90[ASN][1000 genomes]
rs35831442	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs4495886	0.98[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4495887	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs5030768	0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs71478796	0.96[AMR][1000 genomes]
rs71478797	0.87[AFR][1000 genomes];0.98[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs926101	0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:6 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv879640	chr4:97711707-98697586	Active TSS Enhancers Weak transcription ZNF genes & repeats Flanking Active TSS Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
2	nsv830014	chr4:98220259-98419635	Enhancers Weak transcription Active TSS ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv1011217	chr4:98254736-98341313	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
4	nsv879641	chr4:98317295-98506794	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	diseases
5	nsv879642	chr4:98317295-98569259	Enhancers Active TSS Weak transcription ZNF genes & repeats Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
6	nsv879643	chr4:98317295-99065480	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:98317400-98325400	Weak transcription	A549	lung

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