Variant report

Variant	rs1280623
Chromosome Location	chr3:136503404-136503405
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:136503077..136505635-chr3:136505937..136507596,2	MCF-7	breast:
2	chr3:136496957..136499135-chr3:136501135..136503803,2	K562	blood:
3	chr3:136502917..136505188-chr3:136511396..136514165,2	MCF-7	breast:
4	chr3:136498020..136500935-chr3:136501120..136504401,3	MCF-7	breast:

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13063987	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075615	1.00[ASN][1000 genomes]
rs13088001	0.90[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681816	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681818	0.90[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34281413	1.00[ASN][1000 genomes]
rs34613715	1.00[ASN][1000 genomes]
rs34738913	1.00[ASN][1000 genomes]
rs35159729	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4678440	1.00[ASN][1000 genomes]
rs71336078	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1006737	chr3:136466188-136530743	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:32 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136498200-136504400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:136498200-136505000	Weak transcription	Osteobl	bone
3	chr3:136498200-136505800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr3:136499200-136504400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:136500000-136505400	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr3:136500200-136508000	Enhancers	Placenta	Placenta
7	chr3:136502400-136504600	Enhancers	A549	lung
8	chr3:136502600-136503800	Enhancers	Aorta	Aorta
9	chr3:136502800-136504000	Weak transcription	HUES6 Cell Line	embryonic stem cell
10	chr3:136502800-136504000	Weak transcription	Fetal Muscle Leg	muscle
11	chr3:136502800-136504400	Weak transcription	Fetal Muscle Trunk	muscle
12	chr3:136502800-136504600	Weak transcription	Right Atrium	heart
13	chr3:136502800-136504800	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
14	chr3:136502800-136505000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr3:136502800-136505000	Weak transcription	Fetal Lung	lung
16	chr3:136502800-136505000	Weak transcription	Fetal Stomach	stomach
17	chr3:136502800-136505000	Weak transcription	Skeletal Muscle Male	skeletal muscle
18	chr3:136502800-136505000	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr3:136502800-136505000	Enhancers	Hela-S3	cervix
20	chr3:136503000-136503800	Weak transcription	NHLF	lung
21	chr3:136503000-136504400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:136503000-136504400	Weak transcription	Rectal Smooth Muscle	rectum
23	chr3:136503000-136504600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr3:136503000-136505000	Weak transcription	Muscle Satellite Cultured Cells	--
25	chr3:136503000-136505000	Weak transcription	Colon Smooth Muscle	Colon
26	chr3:136503000-136505000	Weak transcription	HSMM	muscle
27	chr3:136503000-136505200	Weak transcription	Stomach Smooth Muscle	stomach
28	chr3:136503000-136505200	Weak transcription	HSMMtube	muscle
29	chr3:136503000-136505200	Weak transcription	NH-A	brain
30	chr3:136503000-136505400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr3:136503200-136504600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
32	chr3:136503200-136505000	Weak transcription	Fetal Thymus	thymus

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