Variant report

Variant	rs1681816
Chromosome Location	chr3:136474762-136474763
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1280623	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13063987	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075615	1.00[ASN][1000 genomes]
rs13088001	0.83[AMR][1000 genomes];0.90[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681818	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34281413	1.00[ASN][1000 genomes]
rs34613715	1.00[ASN][1000 genomes]
rs34738913	1.00[ASN][1000 genomes]
rs35159729	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4678440	1.00[ASN][1000 genomes]
rs71336078	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1006737	chr3:136466188-136530743	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:12 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136473000-136476600	Weak transcription	Primary neutrophils fromperipheralblood	blood
2	chr3:136473000-136476800	Weak transcription	Primary B cells from cord blood	blood
3	chr3:136473000-136476800	Weak transcription	Fetal Muscle Leg	muscle
4	chr3:136473000-136477200	Weak transcription	Adipose Nuclei	Adipose
5	chr3:136473200-136476600	Weak transcription	Monocytes-CD14+_RO01746	blood
6	chr3:136473200-136476800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
7	chr3:136473200-136477200	Weak transcription	Primary hematopoietic stem cells	blood
8	chr3:136473400-136475600	Weak transcription	NHEK	skin
9	chr3:136473600-136476400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:136473600-136476800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr3:136473600-136477000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
12	chr3:136473600-136477000	Weak transcription	Cortex derived primary cultured neurospheres	brain

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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