Variant report

Variant	rs35159729
Chromosome Location	chr3:136468503-136468504
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ZNF384	chr3:136468426-136468832	GM12878	blood:	n/a	n/a
2	TCF7L2	chr3:136468447-136469700	HEK293	kidney:	n/a	chr3:136469328-136469335
3	WRNIP1	chr3:136468478-136468631	GM12878	blood:	n/a	n/a
4	GATA1	chr3:136468374-136470431	PBDE	blood:	n/a	chr3:136470275-136470286 chr3:136470111-136470120 chr3:136469391-136469407 chr3:136470108-136470124 chr3:136469393-136469405
5	RCOR1	chr3:136468484-136468865	K562	blood:	n/a	n/a
6	ZNF384	chr3:136467785-136468805	K562	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type
1	chr3:136466613..136474326-chr3:136579481..136583133,10	K562	blood:
2	chr3:136208388..136211090-chr3:136467197..136470066,2	K562	blood:
3	chr3:136261604..136263396-chr3:136467886..136469461,2	K562	blood:
4	chr3:136233567..136235148-chr3:136468458..136469958,2	K562	blood:
5	chr3:136389263..136391478-chr3:136467252..136469430,2	K562	blood:
6	chr3:136444891..136447189-chr3:136467226..136469420,2	K562	blood:

Variant related genes	Relation type
ENSG00000261758	TF binding region
ENSG00000158092	Chromatin interaction
ENSG00000239213	Chromatin interaction

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs1280623	0.86[AMR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13063987	0.89[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs13075615	1.00[ASN][1000 genomes]
rs13088001	0.86[AMR][1000 genomes];0.88[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681816	0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1681818	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34281413	1.00[ASN][1000 genomes]
rs34613715	1.00[ASN][1000 genomes]
rs34738913	1.00[ASN][1000 genomes]
rs4678440	1.00[ASN][1000 genomes]
rs71336078	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv877529	chr3:136364511-136487559	ZNF genes & repeats Flanking Active TSS Weak transcription Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	30 gene(s)	inside rSNPs	diseases
2	nsv1006737	chr3:136466188-136530743	Active TSS Flanking Active TSS Enhancers Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:123 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:136449000-136470000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr3:136450800-136469000	Weak transcription	Rectal Mucosa Donor 29	rectum
3	chr3:136454200-136469200	Weak transcription	H9 Cell Line	embryonic stem cell
4	chr3:136454200-136470000	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr3:136454400-136469200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
6	chr3:136454800-136469200	Weak transcription	Placenta Amnion	Placenta Amnion
7	chr3:136457400-136470000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr3:136458400-136470000	Weak transcription	Esophagus	oesophagus
9	chr3:136463800-136468800	Enhancers	Primary T helper cells PMA-I stimulated	--
10	chr3:136464000-136468600	Enhancers	Primary hematopoietic stem cells	blood
11	chr3:136464400-136469000	Enhancers	Primary T helper cells fromperipheralblood	blood
12	chr3:136465800-136470000	Weak transcription	Sigmoid Colon	Sigmoid Colon
13	chr3:136466000-136468600	Enhancers	Spleen	Spleen
14	chr3:136466600-136469200	Weak transcription	Placenta	Placenta
15	chr3:136467000-136468600	Enhancers	Lung	lung
16	chr3:136467000-136469000	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr3:136467200-136468800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
18	chr3:136467200-136469000	Enhancers	Primary T cells fromperipheralblood	blood
19	chr3:136467400-136469000	Enhancers	Primary T regulatory cells fromperipheralblood	blood
20	chr3:136467400-136469000	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
21	chr3:136467400-136469000	Enhancers	Right Ventricle	heart
22	chr3:136467400-136469200	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
23	chr3:136467600-136468600	Enhancers	Osteobl	bone
24	chr3:136467600-136468800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:136467600-136468800	Enhancers	iPS-20b Cell Line	embryonic stem cell
26	chr3:136467600-136468800	Enhancers	Duodenum Smooth Muscle	Duodenum
27	chr3:136467600-136468800	Enhancers	HepG2	liver
28	chr3:136467600-136469000	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr3:136467600-136469000	Enhancers	Primary T killer memory cells from peripheral blood	blood
30	chr3:136467600-136469000	Enhancers	Brain Germinal Matrix	brain
31	chr3:136467600-136469000	Enhancers	Left Ventricle	heart
32	chr3:136467600-136469200	Enhancers	H1 Cell Line	embryonic stem cell
33	chr3:136467600-136469200	Enhancers	HUES64 Cell Line	embryonic stem cell
34	chr3:136467600-136469200	Enhancers	Fetal Heart	heart
35	chr3:136467800-136468600	Genic enhancers	Fetal Muscle Trunk	muscle
36	chr3:136467800-136468600	Enhancers	Small Intestine	intestine
37	chr3:136467800-136468800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
38	chr3:136467800-136468800	Enhancers	HUES48 Cell Line	embryonic stem cell
39	chr3:136467800-136468800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
40	chr3:136467800-136468800	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
41	chr3:136467800-136468800	Enhancers	Brain Hippocampus Middle	brain
42	chr3:136467800-136469000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
43	chr3:136467800-136469000	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
44	chr3:136467800-136469000	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
45	chr3:136467800-136469000	Enhancers	HUES6 Cell Line	embryonic stem cell
46	chr3:136467800-136469000	Enhancers	iPS-18 Cell Line	embryonic stem cell
47	chr3:136467800-136469000	Enhancers	Primary monocytes fromperipheralblood	blood
48	chr3:136467800-136469000	Enhancers	Primary neutrophils fromperipheralblood	blood
49	chr3:136467800-136469000	Enhancers	Primary B cells from cord blood	blood
50	chr3:136467800-136469000	Enhancers	Primary T cells from cord blood	blood

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