Variant report

Variant	rs12809368
Chromosome Location	chr12:58691178-58691179
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:58583740..58586016-chr12:58688980..58691352,2	MCF-7	breast:

Extended variants
information (count: 45 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs12809528	0.81[ASN][1000 genomes]
rs12811162	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12814536	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12815062	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12815629	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12817097	0.81[ASN][1000 genomes]
rs12819933	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12821169	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12821697	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12822095	0.89[ASN][1000 genomes]
rs12822443	0.89[ASN][1000 genomes]
rs12824498	0.81[ASN][1000 genomes]
rs12824735	0.83[ASN][1000 genomes]
rs12825103	0.92[CEU][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];0.81[ASN][1000 genomes]
rs12825241	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12825591	0.86[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12827037	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12827543	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12827635	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs12827699	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs12827939	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12829681	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12830609	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1502807	0.81[ASN][1000 genomes]
rs34720173	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35248874	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs35811474	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4760197	0.84[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs4760198	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4760199	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4760200	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4760201	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4760202	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4760203	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4760204	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs4760205	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4760206	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs4760207	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs71432326	0.91[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73101998	0.81[ASN][1000 genomes]
rs73106012	0.95[AFR][1000 genomes];0.92[ASN][1000 genomes]
rs7958950	0.83[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7978543	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7979174	0.95[AFR][1000 genomes];0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58689000-58691200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr12:58690200-58691200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
3	chr12:58690200-58691400	Enhancers	iPS-15b Cell Line	embryonic stem cell
4	chr12:58690400-58691200	Enhancers	HUES64 Cell Line	embryonic stem cell
5	chr12:58691000-58695600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell

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