Variant report

Variant	rs12825103
Chromosome Location	chr12:58637020-58637021
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12809368	0.81[ASN][1000 genomes]
rs12809528	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12817097	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12822095	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12822443	0.92[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs12824498	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12824735	0.94[ASN][1000 genomes]
rs1502807	0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34720173	0.81[ASN][1000 genomes]
rs73101998	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv899124	chr12:58391839-58883507	Weak transcription ZNF genes & repeats Enhancers Flanking Active TSS Active TSS Strong transcription Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	13 gene(s)	inside rSNPs	diseases
2	nsv1047491	chr12:58603291-58643219	Enhancers Active TSS Weak transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	1 gene(s)	inside rSNPs	n/a

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs12825103	C12orf10	cis	parietal	SCAN

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:58636600-58637400	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr12:58636600-58637400	Enhancers	Adipose Nuclei	Adipose
3	chr12:58636600-58637400	Enhancers	Fetal Stomach	stomach
4	chr12:58636600-58637600	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr12:58636800-58637200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:58636800-58637200	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
7	chr12:58637000-58637800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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