Variant report

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs1074428	0.89[EUR][1000 genomes]
rs11610892	0.94[CEU][hapmap];0.81[MKK][hapmap];0.95[TSI][hapmap]
rs11611399	1.00[EUR][1000 genomes]
rs12812537	1.00[EUR][1000 genomes]
rs12813181	1.00[CEU][hapmap]
rs12819127	1.00[CEU][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap]
rs12819341	0.95[EUR][1000 genomes]
rs12823639	0.96[EUR][1000 genomes]
rs12824122	0.94[EUR][1000 genomes]
rs12824857	0.94[AMR][1000 genomes]
rs1492364	1.00[ASW][hapmap];1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];0.94[MKK][hapmap];1.00[TSI][hapmap];1.00[YRI][hapmap];0.89[AFR][1000 genomes];0.94[AMR][1000 genomes];0.93[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17224170	1.00[CEU][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];1.00[TSI][hapmap];0.88[EUR][1000 genomes]
rs17224177	1.00[CEU][hapmap];1.00[TSI][hapmap];0.87[EUR][1000 genomes]
rs1732340	0.90[EUR][1000 genomes]
rs1872444	0.94[CEU][hapmap];1.00[MEX][hapmap];0.86[MKK][hapmap];0.95[TSI][hapmap]
rs34064806	0.94[EUR][1000 genomes]
rs34152211	0.91[AMR][1000 genomes]
rs34619605	0.98[EUR][1000 genomes]
rs4264206	0.96[EUR][1000 genomes]
rs4332578	0.99[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs58891308	0.96[EUR][1000 genomes]
rs67420641	0.94[AMR][1000 genomes]
rs68185827	0.96[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832387	chr12:42345541-42465505	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42443000-42443800	Active TSS	HepG2	liver

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