Variant report

Variant	rs12819341
Chromosome Location	chr12:42406576-42406577
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1074428	0.92[EUR][1000 genomes]
rs11181284	0.97[ASN][1000 genomes]
rs11610892	0.86[AMR][1000 genomes]
rs11611399	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs11613623	0.89[AMR][1000 genomes]
rs12313210	0.97[ASN][1000 genomes]
rs12812537	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12812574	0.95[EUR][1000 genomes]
rs12813181	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12819127	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs12823639	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs12824122	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1492364	0.88[EUR][1000 genomes]
rs17224170	0.87[AFR][1000 genomes];0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs17224177	0.87[AFR][1000 genomes];0.89[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs1732340	0.93[EUR][1000 genomes]
rs1872444	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs1920699	0.97[ASN][1000 genomes]
rs34064806	0.92[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34329231	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs34331898	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs34619605	0.92[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34669984	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs34827386	0.82[AFR][1000 genomes]
rs34842994	0.82[AFR][1000 genomes];0.86[AMR][1000 genomes]
rs35644702	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs35682620	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs35986152	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs3990974	0.86[AFR][1000 genomes];0.80[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs4264206	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs4332578	0.94[EUR][1000 genomes]
rs56142563	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs58891308	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs61279714	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs67788023	0.82[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs68185827	0.84[AFR][1000 genomes];0.93[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7960537	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832387	chr12:42345541-42465505	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:5 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42402800-42417000	Weak transcription	Right Atrium	heart
2	chr12:42405200-42408800	Weak transcription	Brain Germinal Matrix	brain
3	chr12:42405800-42406800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
4	chr12:42406200-42407200	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
5	chr12:42406400-42406600	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links