Variant report

Variant	rs11611399
Chromosome Location	chr12:42449945-42449946
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:37)

rs_ID	r²[population]
rs1074428	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11181284	0.93[ASN][1000 genomes]
rs11610892	0.89[AMR][1000 genomes]
rs11613623	0.80[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12313210	0.93[ASN][1000 genomes]
rs12812537	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs12812574	1.00[EUR][1000 genomes]
rs12813181	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs12819127	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs12819341	0.97[AFR][1000 genomes];0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs12823639	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs12824122	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1492364	0.93[EUR][1000 genomes]
rs17224170	0.90[AFR][1000 genomes];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs17224177	0.90[AFR][1000 genomes];0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs1732340	0.90[EUR][1000 genomes]
rs1872444	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs1920699	0.93[ASN][1000 genomes]
rs34064806	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs34329231	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs34331898	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs34619605	0.95[AFR][1000 genomes];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34669984	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs34827386	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs34842994	0.85[AFR][1000 genomes];0.89[AMR][1000 genomes]
rs35644702	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs35682620	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs35986152	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs3990974	0.88[AFR][1000 genomes];0.83[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs4264206	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs4332578	0.98[EUR][1000 genomes]
rs56142563	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs58891308	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs61279714	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs67788023	0.85[AFR][1000 genomes];0.93[AMR][1000 genomes]
rs68185827	0.82[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs7960537	0.93[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832387	chr12:42345541-42465505	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42449200-42450800	Enhancers	Primary monocytes fromperipheralblood	blood
2	chr12:42449600-42450800	Enhancers	Primary B cells from peripheral blood	blood
3	chr12:42449800-42450200	Enhancers	Primary neutrophils fromperipheralblood	blood
4	chr12:42449800-42450600	Enhancers	Primary B cells from cord blood	blood
5	chr12:42449800-42450600	Enhancers	GM12878-XiMat	blood
6	chr12:42449800-42450600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood

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