Variant report

rSNPs within LD-proxies of this variant (count:25)

rs_ID	r²[population]
rs11181284	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11610892	1.00[CHD][hapmap];0.87[GIH][hapmap];1.00[JPT][hapmap]
rs11611399	0.93[ASN][1000 genomes]
rs12312552	0.82[ASW][hapmap];0.89[YRI][hapmap]
rs12313210	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12319636	0.82[ASW][hapmap];0.89[LWK][hapmap];1.00[YRI][hapmap];0.86[AFR][1000 genomes]
rs12322316	0.89[YRI][hapmap]
rs12812537	0.87[ASN][1000 genomes]
rs12813181	0.88[CHB][hapmap];1.00[JPT][hapmap]
rs12819127	0.88[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap]
rs12819341	0.97[ASN][1000 genomes]
rs12823639	0.90[ASN][1000 genomes]
rs12824122	0.97[ASN][1000 genomes]
rs17224170	0.88[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap];0.87[ASN][1000 genomes]
rs17224177	0.88[CHB][hapmap];1.00[CHD][hapmap];1.00[JPT][hapmap];0.81[ASN][1000 genomes]
rs1872444	0.88[CHB][hapmap];1.00[CHD][hapmap];0.88[GIH][hapmap];1.00[JPT][hapmap]
rs34064806	0.97[ASN][1000 genomes]
rs34619605	0.93[ASN][1000 genomes]
rs3990974	0.80[ASN][1000 genomes]
rs4264206	0.90[ASN][1000 genomes]
rs55924052	0.88[EUR][1000 genomes]
rs58891308	0.85[ASN][1000 genomes]
rs61324723	0.82[AFR][1000 genomes];1.00[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs68185827	0.97[ASN][1000 genomes]
rs7960537	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv430505	chr12:42297931-42720773	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	38 gene(s)	inside rSNPs	diseases
2	nsv832387	chr12:42345541-42465505	Enhancers Bivalent/Poised TSS Weak transcription Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs1920699	ZCRB1	cis	lymphoblastoid	seeQTL

Chromatin state (count:16 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:42355400-42361400	Weak transcription	Brain Anterior Caudate	brain
2	chr12:42356400-42361400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
3	chr12:42356400-42361600	Weak transcription	Fetal Intestine Large	intestine
4	chr12:42356400-42361600	Weak transcription	Fetal Muscle Leg	muscle
5	chr12:42359400-42363000	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
6	chr12:42359600-42361400	Weak transcription	Fetal Lung	lung
7	chr12:42359800-42361200	Weak transcription	Fetal Kidney	kidney
8	chr12:42360200-42361400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr12:42360200-42361400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
10	chr12:42360200-42361400	Weak transcription	Cortex derived primary cultured neurospheres	brain
11	chr12:42360600-42363000	Enhancers	HUES64 Cell Line	embryonic stem cell
12	chr12:42360800-42361800	Enhancers	HUVEC	blood vessel
13	chr12:42361000-42361600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr12:42361000-42361600	Enhancers	HUES6 Cell Line	embryonic stem cell
15	chr12:42361000-42361600	Enhancers	iPS-18 Cell Line	embryonic stem cell
16	chr12:42361000-42362800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived

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