Variant report

Variant	rs12818510
Chromosome Location	chr12:12718875-12718876
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs10845577	0.89[EUR][1000 genomes]
rs12823557	0.93[ASN][1000 genomes]
rs12825424	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs35277614	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs56085232	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758295	chr12:12620654-12783124	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv2759880	chr12:12620654-12783124	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv898811	chr12:12655443-12928295	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12717000-12720000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:12717000-12735200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:12717600-12724800	Weak transcription	GM12878-XiMat	blood
4	chr12:12718200-12719400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr12:12718200-12720600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
6	chr12:12718200-12722600	Weak transcription	HepG2	liver
7	chr12:12718400-12720200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
8	chr12:12718600-12721600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr12:12718600-12724600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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