Variant report

Variant	rs35277614
Chromosome Location	chr12:12718489-12718490
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
DUSP16	TF binding region
ENSG00000111266	Chromatin interaction
ENSG00000111269	Chromatin interaction
ENSG00000240424	Chromatin interaction

Extended variants
information (count: 7 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs12818510	0.84[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs12823557	0.91[ASN][1000 genomes]
rs12825424	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs56085232	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758295	chr12:12620654-12783124	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv2759880	chr12:12620654-12783124	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv898811	chr12:12655443-12928295	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12717000-12720000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
2	chr12:12717000-12735200	Weak transcription	Sigmoid Colon	Sigmoid Colon
3	chr12:12717600-12724800	Weak transcription	GM12878-XiMat	blood
4	chr12:12718200-12718600	ZNF genes & repeats	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:12718200-12719400	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
6	chr12:12718200-12720600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr12:12718200-12722600	Weak transcription	HepG2	liver
8	chr12:12718400-12720200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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