Variant report

Variant	rs12825424
Chromosome Location	chr12:12721149-12721150
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs11054979	1.00[JPT][hapmap]
rs12818510	0.87[AFR][1000 genomes];0.94[ASN][1000 genomes]
rs12823557	0.90[ASN][1000 genomes]
rs12825576	0.80[AMR][1000 genomes]
rs35277614	0.92[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs35521995	0.80[AMR][1000 genomes]
rs56085232	0.83[AFR][1000 genomes];0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv2758295	chr12:12620654-12783124	Active TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
2	esv2759880	chr12:12620654-12783124	Enhancers Active TSS Flanking Active TSS Weak transcription Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent/Poised TSS Flanking Bivalent TSS/Enh Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	25 gene(s)	inside rSNPs	diseases
3	nsv898811	chr12:12655443-12928295	Flanking Active TSS Weak transcription Enhancers Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	41 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:12717000-12735200	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr12:12717600-12724800	Weak transcription	GM12878-XiMat	blood
3	chr12:12718200-12722600	Weak transcription	HepG2	liver
4	chr12:12718600-12721600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr12:12718600-12724600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
6	chr12:12720200-12721800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
7	chr12:12720600-12722000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr12:12720600-12735600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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