Variant report

Variant	rs12825459
Chromosome Location	chr12:106288344-106288345
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12370011	0.82[EUR][1000 genomes]
rs12425720	0.84[EUR][1000 genomes]
rs12823139	0.83[EUR][1000 genomes]
rs12825669	0.83[AMR][1000 genomes];0.81[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2032767	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2032768	0.81[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4326893	0.81[AMR][1000 genomes];0.86[ASN][1000 genomes]
rs7295289	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7296251	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7300132	0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7306627	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs73190160	0.80[EUR][1000 genomes]
rs7975867	0.81[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106283000-106290000	Weak transcription	Right Atrium	heart
2	chr12:106284800-106290000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
3	chr12:106286400-106294400	Weak transcription	HSMMtube	muscle
4	chr12:106287600-106288600	Weak transcription	K562	blood

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links