Variant report

Variant	rs7306627
Chromosome Location	chr12:106290507-106290508
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12370011	0.85[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap]
rs12823139	0.99[EUR][1000 genomes]
rs12825459	0.82[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs12825669	0.88[ASN][1000 genomes]
rs2032767	0.82[ASN][1000 genomes]
rs2032768	0.83[ASN][1000 genomes]
rs4326893	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs7295289	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs7296251	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7300132	0.84[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs73190160	0.97[EUR][1000 genomes]
rs7957583	0.80[ASN][1000 genomes]
rs7975867	1.00[AFR][1000 genomes];0.97[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106286400-106294400	Weak transcription	HSMMtube	muscle
2	chr12:106289600-106290600	Weak transcription	H9 Cell Line	embryonic stem cell
3	chr12:106289600-106291200	Enhancers	ES-I3 Cell Line	embryonic stem cell
4	chr12:106289800-106291200	Enhancers	iPS-20b Cell Line	embryonic stem cell
5	chr12:106289800-106291400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
6	chr12:106290000-106291200	Enhancers	HUES48 Cell Line	embryonic stem cell
7	chr12:106290000-106291200	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
8	chr12:106290000-106291400	Enhancers	H1 Cell Line	embryonic stem cell
9	chr12:106290000-106291600	Enhancers	Esophagus	oesophagus
10	chr12:106290000-106292200	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr12:106290000-106293800	Enhancers	NHEK	skin
12	chr12:106290200-106291000	Flanking Active TSS	HUES6 Cell Line	embryonic stem cell
13	chr12:106290200-106291800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr12:106290200-106292000	Enhancers	iPS-15b Cell Line	embryonic stem cell
15	chr12:106290200-106292800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
16	chr12:106290400-106291800	Enhancers	ES-UCSF4 Cell Line	embryonic stem cell
17	chr12:106290400-106291800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
18	chr12:106290400-106292000	Enhancers	iPS-18 Cell Line	embryonic stem cell

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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