Variant report

Variant	rs7295289
Chromosome Location	chr12:106282754-106282755
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs12370011	0.87[CEU][hapmap];0.86[CHB][hapmap];0.93[GIH][hapmap];0.83[JPT][hapmap]
rs12823139	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs12825459	0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2032767	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2032768	0.83[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs4326893	0.96[AFR][1000 genomes];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7296251	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs7300132	0.95[AFR][1000 genomes];0.97[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7306627	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs73190160	0.87[AFR][1000 genomes];0.92[AMR][1000 genomes];0.97[EUR][1000 genomes]
rs7975867	0.84[AMR][1000 genomes];0.98[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv832508	chr12:106198797-106409112	Weak transcription Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs7295289	FHIT	trans	cerebellum	SCAN

Chromatin state (count:10 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:106280200-106284200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr12:106280600-106284000	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr12:106281000-106283200	Weak transcription	Aorta	Aorta
4	chr12:106281600-106283200	Enhancers	HSMMtube	muscle
5	chr12:106282200-106283000	Enhancers	HSMM	muscle
6	chr12:106282200-106283200	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
7	chr12:106282400-106282800	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
8	chr12:106282400-106282800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
9	chr12:106282400-106283000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
10	chr12:106282600-106283000	Enhancers	Ovary	ovary

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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