Variant report

Variant	rs12825611
Chromosome Location	chr12:121810194-121810195
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr12:121787735..121790152-chr12:121809035..121810678,2	K562	blood:

Variant related genes	Relation type
ENSG00000089053	Chromatin interaction

Extended variants
information (count: 32 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:32)

rs_ID	r²[population]
rs10400545	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs11610060	1.00[AFR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11610335	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11611253	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs11613001	1.00[ASN][1000 genomes]
rs11614859	1.00[ASN][1000 genomes]
rs11615493	1.00[CEU][hapmap];1.00[ASN][1000 genomes]
rs11616052	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs11831561	1.00[ASN][1000 genomes]
rs11836127	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs12815130	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12819229	1.00[ASN][1000 genomes]
rs12825462	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12825642	1.00[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12830931	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[ASN][1000 genomes]
rs34097145	1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs34301487	1.00[ASN][1000 genomes]
rs34306762	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34439313	1.00[AFR][1000 genomes];0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34606348	1.00[ASN][1000 genomes]
rs34898852	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35057346	0.84[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35252229	1.00[ASN][1000 genomes]
rs35481664	1.00[ASN][1000 genomes]
rs35718230	1.00[ASN][1000 genomes]
rs35853173	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35882228	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];0.84[GIH][hapmap];1.00[MEX][hapmap];1.00[ASN][1000 genomes]
rs36122756	1.00[ASN][1000 genomes]
rs71454687	1.00[ASN][1000 genomes]
rs71454688	1.00[ASN][1000 genomes]
rs71454689	1.00[ASN][1000 genomes]
rs71454690	1.00[ASN][1000 genomes]

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121808200-121810800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr12:121809000-121810400	Enhancers	HepG2	liver

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