Variant report

Variant	rs34301487
Chromosome Location	chr12:121770932-121770933
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr12:121765019..121767812-chr12:121769391..121771266,3	K562	blood:
2	chr12:121770679..121772794-chr12:121773975..121776901,3	K562	blood:
3	chr12:121770480..121773163-chr12:121788922..121791466,2	K562	blood:
4	chr12:121765884..121767945-chr12:121769635..121773990,4	K562	blood:
5	chr12:121770767..121773067-chr12:121773528..121776637,3	K562	blood:
6	chr12:121769680..121771948-chr12:121876762..121878307,2	K562	blood:

Variant related genes	Relation type
ENSG00000089053	Chromatin interaction

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10400545	1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11610060	1.00[ASN][1000 genomes]
rs11610335	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11611253	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11613001	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11614587	1.00[AFR][1000 genomes]
rs11614859	0.84[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11615493	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11616052	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11831561	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11836127	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12809685	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12813237	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs12815130	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs12819229	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12821054	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs12825462	1.00[ASN][1000 genomes]
rs12825611	1.00[ASN][1000 genomes]
rs12830931	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34097145	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34306762	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34439313	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs34606348	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs34898852	1.00[ASN][1000 genomes]
rs35057346	0.82[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs35252229	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35312287	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs35481664	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35583078	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs35718230	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35853173	1.00[ASN][1000 genomes]
rs35882228	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35933304	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes]
rs36122756	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71454687	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71454688	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71454689	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs71454690	0.84[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

No data

Chromatin state (count:126 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:121744200-121783400	Weak transcription	Stomach Mucosa	stomach
2	chr12:121751200-121785600	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
3	chr12:121751400-121785800	Strong transcription	Fetal Thymus	thymus
4	chr12:121752000-121785800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr12:121752000-121787000	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr12:121752400-121776000	Strong transcription	Duodenum Mucosa	Duodenum
7	chr12:121753200-121786000	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr12:121753400-121786000	Strong transcription	HUES64 Cell Line	embryonic stem cell
9	chr12:121753800-121775600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
10	chr12:121754000-121776000	Strong transcription	Primary T cells fromperipheralblood	blood
11	chr12:121754000-121785600	Strong transcription	HUES6 Cell Line	embryonic stem cell
12	chr12:121754000-121785800	Strong transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
13	chr12:121754000-121786000	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr12:121754400-121776000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
15	chr12:121754600-121772400	Strong transcription	Primary T helper cells PMA-I stimulated	--
16	chr12:121754800-121772400	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
17	chr12:121754800-121775600	Strong transcription	Rectal Mucosa Donor 29	rectum
18	chr12:121754800-121784800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
19	chr12:121754800-121784800	Strong transcription	Fetal Stomach	stomach
20	chr12:121755600-121772000	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
21	chr12:121757400-121772400	Strong transcription	Primary T helper naive cells fromperipheralblood	blood
22	chr12:121757800-121776200	Strong transcription	Thymus	Thymus
23	chr12:121758200-121772200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
24	chr12:121759800-121786400	Strong transcription	Dnd41	blood
25	chr12:121760200-121775600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
26	chr12:121760200-121776000	Strong transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
27	chr12:121760200-121785800	Strong transcription	HUES48 Cell Line	embryonic stem cell
28	chr12:121760200-121786000	Strong transcription	Primary B cells from peripheral blood	blood
29	chr12:121760400-121772400	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
30	chr12:121760400-121773200	Strong transcription	GM12878-XiMat	blood
31	chr12:121760400-121776400	Strong transcription	H1 Cell Line	embryonic stem cell
32	chr12:121760600-121772000	Strong transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
33	chr12:121760600-121776000	Strong transcription	Stomach Smooth Muscle	stomach
34	chr12:121760600-121784400	Strong transcription	Left Ventricle	heart
35	chr12:121760800-121775600	Strong transcription	Placenta	Placenta
36	chr12:121760800-121775600	Strong transcription	K562	blood
37	chr12:121760800-121785400	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
38	chr12:121761000-121772600	Strong transcription	Adipose Nuclei	Adipose
39	chr12:121761000-121772600	Strong transcription	Duodenum Smooth Muscle	Duodenum
40	chr12:121761000-121775400	Strong transcription	iPS-18 Cell Line	embryonic stem cell
41	chr12:121761000-121775800	Strong transcription	HepG2	liver
42	chr12:121761000-121776200	Strong transcription	Primary B cells from cord blood	blood
43	chr12:121761200-121772200	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
44	chr12:121761200-121775800	Strong transcription	Foreskin Fibroblast Primary Cells skin01	Skin
45	chr12:121761400-121775800	Strong transcription	Rectal Mucosa Donor 31	rectum
46	chr12:121761400-121785200	Strong transcription	Osteobl	bone
47	chr12:121761600-121772400	Strong transcription	NHDF-Ad	bronchial
48	chr12:121761600-121774000	Strong transcription	Primary T killer naive cells fromperipheralblood	blood
49	chr12:121762600-121772400	Strong transcription	Primary T helper naive cells from peripheral blood	blood
50	chr12:121762600-121772600	Strong transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

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