Variant report
| Variant | rs34898852 |
|---|---|
| Chromosome Location | chr12:121809154-121809155 |
| allele | A/G |
| Outlinks | Ensembl UCSC |
- TF binding region (count:0)
- CpG islands (count:0)
- Chromatin interactive region (count:1)
- LncRNA region (count:0)
- Mature miRNA region (count: 0)
- miRNA target sites (count:0)
| No data |
| No data |
(count:1 , 50 per page) page:
1
| No. | Distal block | Cell Line | Cell type | Cell Stage |
|---|---|---|---|---|
| 1 | chr12:121787735..121790152-chr12:121809035..121810678,2 | K562 | blood: |
| No data |
| No data |
| No data |
| Variant related genes | Relation type |
|---|---|
| ENSG00000089053 | Chromatin interaction |
rSNPs within LD-proxies of this variant (count:32)
| rs_ID | r2[population] |
|---|---|
| rs10400545 | 1.00[ASN][1000 genomes] |
| rs11610060 | 0.87[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs11610335 | 1.00[ASN][1000 genomes] |
| rs11611253 | 1.00[ASN][1000 genomes] |
| rs11613001 | 1.00[ASN][1000 genomes] |
| rs11614859 | 1.00[ASN][1000 genomes] |
| rs11615493 | 1.00[ASN][1000 genomes] |
| rs11616052 | 1.00[ASN][1000 genomes] |
| rs11831561 | 1.00[ASN][1000 genomes] |
| rs11836127 | 1.00[ASN][1000 genomes] |
| rs12815130 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12819229 | 1.00[ASN][1000 genomes] |
| rs12825462 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12825611 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs12825642 | 1.00[AMR][1000 genomes];0.94[EUR][1000 genomes] |
| rs12830931 | 1.00[ASN][1000 genomes] |
| rs34097145 | 1.00[ASN][1000 genomes] |
| rs34301487 | 1.00[ASN][1000 genomes] |
| rs34306762 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34439313 | 0.84[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs34606348 | 1.00[ASN][1000 genomes] |
| rs35057346 | 0.84[AMR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35252229 | 1.00[ASN][1000 genomes] |
| rs35481664 | 1.00[ASN][1000 genomes] |
| rs35718230 | 1.00[ASN][1000 genomes] |
| rs35853173 | 1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes] |
| rs35882228 | 1.00[ASN][1000 genomes] |
| rs36122756 | 1.00[ASN][1000 genomes] |
| rs71454687 | 1.00[ASN][1000 genomes] |
| rs71454688 | 1.00[ASN][1000 genomes] |
| rs71454689 | 1.00[ASN][1000 genomes] |
| rs71454690 | 1.00[ASN][1000 genomes] |
| No data |
| No. | Chromosome Location | Chromatin state | Cell line | Tissue |
|---|---|---|---|---|
| 1 | chr12:121808200-121810800 | Weak transcription | Mesenchymal Stem Cell Derived Adipocyte Cultured Cells | ES cell derived |
| 2 | chr12:121809000-121810400 | Enhancers | HepG2 | liver |
