Variant report

Variant	rs12829286
Chromosome Location	chr12:10093555-10093556
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12824621	1.00[AFR][1000 genomes]
rs1323458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34086707	1.00[AFR][1000 genomes]
rs35288134	1.00[AFR][1000 genomes]
rs35906004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35970651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55940966	1.00[AFR][1000 genomes]
rs61918586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71450006	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044587	chr12:10029514-10123414	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523050	chr12:10031880-10124373	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898755	chr12:10069302-10186284	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10089800-10095400	Weak transcription	Primary monocytes fromperipheralblood	blood
2	chr12:10092800-10095600	Enhancers	Primary neutrophils fromperipheralblood	blood
3	chr12:10093200-10093600	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
4	chr12:10093200-10094200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
5	chr12:10093400-10093600	Bivalent/Poised TSS	Primary T helper memory cells from peripheral blood 1	blood
6	chr12:10093400-10094000	Weak transcription	Primary hematopoietic stem cells	blood
7	chr12:10093400-10094200	Enhancers	Primary hematopoietic stem cells short term culture	blood
8	chr12:10093400-10094200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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