Variant report

Variant	rs35970651
Chromosome Location	chr12:10111441-10111442
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 13 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12824621	1.00[AFR][1000 genomes]
rs12829286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs1323458	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34086707	1.00[AFR][1000 genomes]
rs35288134	1.00[AFR][1000 genomes]
rs35906004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55940966	1.00[AFR][1000 genomes]
rs61918586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71450006	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1044587	chr12:10029514-10123414	Enhancers Flanking Active TSS Active TSS Weak transcription ZNF genes & repeats Strong transcription Bivalent Enhancer Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
2	nsv523050	chr12:10031880-10124373	Flanking Active TSS Weak transcription Enhancers ZNF genes & repeats Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	9 gene(s)	inside rSNPs	diseases
3	nsv898755	chr12:10069302-10186284	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
4	nsv975404	chr12:10102404-10114263	Enhancers Weak transcription Flanking Active TSS	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10104600-10112200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
2	chr12:10107800-10111600	Enhancers	Primary T cells from cord blood	blood
3	chr12:10110000-10111600	Enhancers	Primary T helper naive cells from peripheral blood	blood
4	chr12:10110000-10111600	Enhancers	Primary T killer memory cells from peripheral blood	blood
5	chr12:10110000-10112400	Enhancers	Monocytes-CD14+_RO01746	blood
6	chr12:10110200-10111600	Enhancers	Primary T killer naive cells fromperipheralblood	blood
7	chr12:10110200-10114200	Enhancers	Primary B cells from peripheral blood	blood
8	chr12:10110200-10115400	Enhancers	Primary monocytes fromperipheralblood	blood
9	chr12:10110600-10111800	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
10	chr12:10110800-10113000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
11	chr12:10110800-10113000	Weak transcription	GM12878-XiMat	blood
12	chr12:10110800-10113400	Weak transcription	Primary neutrophils fromperipheralblood	blood
13	chr12:10111200-10113400	Weak transcription	Dnd41	blood
14	chr12:10111400-10112600	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
15	chr12:10111400-10113200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
16	chr12:10111400-10113400	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
17	chr12:10111400-10113400	Weak transcription	Primary T helper cells fromperipheralblood	blood
18	chr12:10111400-10113400	Weak transcription	Fetal Thymus	thymus
19	chr12:10111400-10113600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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