Variant report

Variant	rs1323458
Chromosome Location	chr12:10167809-10167810
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs12824621	1.00[AFR][1000 genomes]
rs12829286	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs34086707	1.00[AFR][1000 genomes]
rs35288134	1.00[AFR][1000 genomes]
rs35906004	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs35970651	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs55940966	1.00[AFR][1000 genomes]
rs61918586	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs71450006	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv898755	chr12:10069302-10186284	Flanking Active TSS Active TSS Weak transcription Enhancers Bivalent Enhancer Genic enhancers Flanking Bivalent TSS/Enh Strong transcription Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	12 gene(s)	inside rSNPs	diseases
2	nsv1043125	chr12:10121288-10177037	Active TSS Genic enhancers Weak transcription Enhancers Flanking Active TSS Strong transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv1042106	chr12:10121288-10177636	Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats Flanking Active TSS Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
4	nsv1040610	chr12:10121288-10179374	Enhancers ZNF genes & repeats Flanking Active TSS Strong transcription Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
5	nsv898756	chr12:10142538-10174314	Active TSS Enhancers Weak transcription Flanking Active TSS Strong transcription Bivalent Enhancer ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:9 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr12:10163200-10170200	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr12:10165200-10169000	Strong transcription	Primary monocytes fromperipheralblood	blood
3	chr12:10165600-10170000	Weak transcription	Esophagus	oesophagus
4	chr12:10165800-10168200	Weak transcription	HUES64 Cell Line	embryonic stem cell
5	chr12:10166200-10169400	Weak transcription	Brain Hippocampus Middle	brain
6	chr12:10167200-10168800	Weak transcription	HUVEC	blood vessel
7	chr12:10167200-10169800	Weak transcription	Primary hematopoietic stem cells	blood
8	chr12:10167600-10168200	Genic enhancers	Primary neutrophils fromperipheralblood	blood
9	chr12:10167600-10170800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links