Variant report

Variant	rs1282974
Chromosome Location	chr3:111569410-111569411
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111568994..111570957-chr3:111577766..111580247,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144824	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1709249	0.85[AMR][1000 genomes]
rs57784706	0.83[AMR][1000 genomes]
rs72938226	1.00[AMR][1000 genomes]
rs72938229	1.00[AMR][1000 genomes]
rs72938231	1.00[AMR][1000 genomes]
rs72938235	1.00[AMR][1000 genomes]
rs72938238	0.83[AMR][1000 genomes]
rs72938239	0.83[AMR][1000 genomes]
rs72938244	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
2	chr3:111563000-111577400	Weak transcription	HepG2	liver
3	chr3:111563800-111571200	Weak transcription	Stomach Mucosa	stomach
4	chr3:111565000-111571200	Enhancers	Placenta	Placenta
5	chr3:111565600-111570200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
6	chr3:111565800-111570200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr3:111565800-111570200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:111565800-111570600	Weak transcription	HSMM	muscle
9	chr3:111566000-111569600	Weak transcription	Osteobl	bone
10	chr3:111566000-111571400	Weak transcription	Fetal Heart	heart
11	chr3:111566200-111570000	Weak transcription	Muscle Satellite Cultured Cells	--
12	chr3:111566200-111570000	Weak transcription	NH-A	brain
13	chr3:111566200-111570400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:111566200-111577400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
15	chr3:111567200-111570800	Weak transcription	HUES64 Cell Line	embryonic stem cell
16	chr3:111567600-111570400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr3:111567600-111570400	Weak transcription	HUES6 Cell Line	embryonic stem cell
18	chr3:111567600-111570400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
19	chr3:111567800-111570200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:111567800-111570200	Weak transcription	Small Intestine	intestine
21	chr3:111567800-111570200	Weak transcription	A549	lung
22	chr3:111567800-111577400	Weak transcription	Liver	Liver
23	chr3:111567800-111577400	Weak transcription	NHDF-Ad	bronchial
24	chr3:111568000-111570000	Weak transcription	HMEC	breast
25	chr3:111568000-111570200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
26	chr3:111568000-111571400	Weak transcription	Duodenum Mucosa	Duodenum
27	chr3:111568200-111569600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
28	chr3:111568200-111570000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
29	chr3:111568400-111570000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
30	chr3:111568400-111570000	Weak transcription	NHEK	skin
31	chr3:111568400-111570600	Weak transcription	Fetal Intestine Large	intestine
32	chr3:111569000-111570200	Enhancers	HUVEC	blood vessel
33	chr3:111569200-111569600	ZNF genes & repeats	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
34	chr3:111569400-111569600	Enhancers	Fetal Muscle Leg	muscle
35	chr3:111569400-111569600	Enhancers	NHLF	lung
36	chr3:111569400-111570000	Enhancers	Hela-S3	cervix
37	chr3:111569400-111571800	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin

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