Variant report

Variant	rs72938235
Chromosome Location	chr3:111568132-111568133
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:111566221..111568973-chr3:111577173..111579400,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000144824	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1282974	1.00[AMR][1000 genomes]
rs1709249	0.85[AMR][1000 genomes]
rs57784706	0.83[AMR][1000 genomes]
rs72938226	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938229	1.00[AMR][1000 genomes]
rs72938231	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs72938238	0.93[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72938239	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs72938244	0.83[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111541200-111577600	Weak transcription	Pancreas	Pancrea
2	chr3:111563000-111577400	Weak transcription	HepG2	liver
3	chr3:111563600-111568400	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
4	chr3:111563800-111571200	Weak transcription	Stomach Mucosa	stomach
5	chr3:111564400-111568400	Enhancers	NHEK	skin
6	chr3:111564600-111568400	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
7	chr3:111564600-111568400	Enhancers	Hela-S3	cervix
8	chr3:111564800-111568200	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
9	chr3:111564800-111568200	Enhancers	Foreskin Keratinocyte Primary Cells skin03	Skin
10	chr3:111565000-111571200	Enhancers	Placenta	Placenta
11	chr3:111565400-111569400	Weak transcription	NHLF	lung
12	chr3:111565600-111570200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
13	chr3:111565800-111570200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr3:111565800-111570200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:111565800-111570600	Weak transcription	HSMM	muscle
16	chr3:111566000-111569600	Weak transcription	Osteobl	bone
17	chr3:111566000-111571400	Weak transcription	Fetal Heart	heart
18	chr3:111566200-111570000	Weak transcription	Muscle Satellite Cultured Cells	--
19	chr3:111566200-111570000	Weak transcription	NH-A	brain
20	chr3:111566200-111570400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:111566200-111577400	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
22	chr3:111567200-111568200	Genic enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
23	chr3:111567200-111568400	Enhancers	Fetal Intestine Large	intestine
24	chr3:111567200-111570800	Weak transcription	HUES64 Cell Line	embryonic stem cell
25	chr3:111567600-111569000	Weak transcription	HUVEC	blood vessel
26	chr3:111567600-111570400	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
27	chr3:111567600-111570400	Weak transcription	HUES6 Cell Line	embryonic stem cell
28	chr3:111567600-111570400	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
29	chr3:111567800-111570200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:111567800-111570200	Weak transcription	Small Intestine	intestine
31	chr3:111567800-111570200	Weak transcription	A549	lung
32	chr3:111567800-111577400	Weak transcription	Liver	Liver
33	chr3:111567800-111577400	Weak transcription	NHDF-Ad	bronchial
34	chr3:111568000-111568200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr3:111568000-111570000	Weak transcription	HMEC	breast
36	chr3:111568000-111570200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr3:111568000-111571400	Weak transcription	Duodenum Mucosa	Duodenum

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