Variant report

Variant	rs57784706
Chromosome Location	chr3:111581315-111581316
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr3:111580329..111581908-chr3:111582056..111583865,2	MCF-7	breast:
2	chr3:111579110..111581393-chr3:111581603..111584247,2	MCF-7	breast:
3	chr17:57914576..57917044-chr3:111580672..111583133,2	MCF-7	breast:
4	chr14:77786295..77788288-chr3:111579023..111581381,2	MCF-7	breast:
5	chr3:111581231..111584187-chr3:111592422..111594692,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000009830	Chromatin interaction
ENSG00000100577	Chromatin interaction
ENSG00000062716	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs1282974	0.83[AMR][1000 genomes]
rs72936491	0.83[AMR][1000 genomes]
rs72938226	0.83[AMR][1000 genomes]
rs72938229	0.83[AMR][1000 genomes]
rs72938231	0.83[AMR][1000 genomes]
rs72938235	0.83[AMR][1000 genomes]
rs72938238	1.00[AMR][1000 genomes]
rs72938239	1.00[AMR][1000 genomes]
rs72938244	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv829676	chr3:111464087-111619200	Genic enhancers Strong transcription Enhancers Active TSS Weak transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	11 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:111577400-111582000	Active TSS	Aorta	Aorta
2	chr3:111577400-111582000	Active TSS	HSMMtube	muscle
3	chr3:111577600-111581800	Active TSS	Left Ventricle	heart
4	chr3:111578400-111581600	Bivalent/Poised TSS	Skeletal Muscle Female	skeletal muscle
5	chr3:111579200-111581400	Bivalent/Poised TSS	Skeletal Muscle Male	skeletal muscle
6	chr3:111579400-111585000	Weak transcription	Gastric	stomach
7	chr3:111579600-111584800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr3:111579800-111581600	Transcr. at gene 5' and 3'	NHEK	skin
9	chr3:111579800-111582400	Weak transcription	Small Intestine	intestine
10	chr3:111579800-111584400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
11	chr3:111579800-111588400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
12	chr3:111579800-111589000	Weak transcription	Pancreas	Pancrea
13	chr3:111580000-111581400	Flanking Active TSS	Hela-S3	cervix
14	chr3:111580000-111589200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
15	chr3:111580200-111581800	Flanking Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
16	chr3:111580200-111582200	Flanking Active TSS	Adipose Nuclei	Adipose
17	chr3:111580200-111582400	Enhancers	Fetal Adrenal Gland	Adrenal Gland
18	chr3:111580200-111582600	Enhancers	H9 Cell Line	embryonic stem cell
19	chr3:111580200-111582800	Weak transcription	Fetal Intestine Large	intestine
20	chr3:111580400-111583000	Bivalent Enhancer	iPS-15b Cell Line	embryonic stem cell
21	chr3:111580400-111583200	Enhancers	Duodenum Mucosa	Duodenum
22	chr3:111580400-111583800	Weak transcription	Primary hematopoietic stem cells short term culture	blood
23	chr3:111580400-111583800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
24	chr3:111580400-111584200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
25	chr3:111580400-111584600	Enhancers	HepG2	liver
26	chr3:111580600-111581400	Bivalent Enhancer	H1 Cell Line	embryonic stem cell
27	chr3:111580600-111581400	Flanking Active TSS	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:111580600-111581400	Enhancers	Fetal Muscle Trunk	muscle
29	chr3:111580600-111581600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
30	chr3:111580600-111581600	Enhancers	Fetal Lung	lung
31	chr3:111580600-111581800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:111580600-111581800	Enhancers	Colon Smooth Muscle	Colon
33	chr3:111580600-111581800	Weak transcription	Pancreatic Islets	Pancreatic Islet
34	chr3:111580600-111582200	Enhancers	Placenta	Placenta
35	chr3:111580600-111582200	Enhancers	Right Atrium	heart
36	chr3:111580600-111582600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
37	chr3:111580600-111583000	Weak transcription	Ovary	ovary
38	chr3:111580600-111583200	Bivalent Enhancer	HUES48 Cell Line	embryonic stem cell
39	chr3:111580600-111583600	Enhancers	A549	lung
40	chr3:111580600-111584000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
41	chr3:111580600-111584200	Bivalent Enhancer	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
42	chr3:111580600-111584200	Bivalent Enhancer	HUES64 Cell Line	embryonic stem cell
43	chr3:111580600-111584600	Enhancers	Fetal Stomach	stomach
44	chr3:111580600-111585800	Enhancers	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
45	chr3:111580800-111581600	Bivalent Enhancer	ES-I3 Cell Line	embryonic stem cell
46	chr3:111580800-111581800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
47	chr3:111580800-111581800	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
48	chr3:111580800-111582200	Enhancers	Fetal Muscle Leg	muscle
49	chr3:111580800-111583200	Enhancers	HUVEC	blood vessel
50	chr3:111580800-111583400	Weak transcription	Fetal Kidney	kidney

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