Variant report

Variant	rs12862
Chromosome Location	chr6:6145109-6145110
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 15 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs17141762	0.85[AMR][1000 genomes]
rs17141804	0.91[ASW][hapmap];0.92[LWK][hapmap];0.86[MKK][hapmap];1.00[YRI][hapmap];0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3024461	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3024462	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3024463	1.00[ASW][hapmap];1.00[LWK][hapmap];1.00[MEX][hapmap];1.00[MKK][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3024464	1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56988705	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73357508	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73357515	0.92[AFR][1000 genomes]
rs73357516	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73357521	0.92[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720310	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720311	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs7756161	1.00[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031283	chr6:6084559-6160039	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:7 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:6143800-6145800	Strong transcription	Primary monocytes fromperipheralblood	blood
2	chr6:6144000-6163600	Strong transcription	Monocytes-CD14+_RO01746	blood
3	chr6:6144200-6151600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
4	chr6:6144600-6147400	Strong transcription	HSMMtube	muscle
5	chr6:6145000-6145800	Weak transcription	Placenta	Placenta
6	chr6:6145000-6146400	Strong transcription	Adipose Nuclei	Adipose
7	chr6:6145000-6179800	Weak transcription	HSMM	muscle

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Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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