Variant report

Variant	rs73357508
Chromosome Location	chr6:6149529-6149530
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 14 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:13)

rs_ID	r²[population]
rs12862	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs17141762	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs17141804	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3024461	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3024462	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3024463	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs3024464	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs56988705	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73357515	0.98[AFR][1000 genomes]
rs73357516	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73357521	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720310	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs73720311	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031283	chr6:6084559-6160039	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:8 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:6144000-6163600	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr6:6144200-6151600	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
3	chr6:6145000-6179800	Weak transcription	HSMM	muscle
4	chr6:6146800-6160200	Strong transcription	Primary monocytes fromperipheralblood	blood
5	chr6:6146800-6200400	Weak transcription	Placenta	Placenta
6	chr6:6148400-6156200	Strong transcription	HSMMtube	muscle
7	chr6:6148600-6150200	Strong transcription	Adipose Nuclei	Adipose
8	chr6:6149400-6151400	Weak transcription	Liver	Liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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