Variant report

Variant	rs17141762
Chromosome Location	chr6:6139061-6139062
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs12862	0.90[YRI][hapmap];0.85[AMR][1000 genomes]
rs17133317	1.00[EUR][1000 genomes]
rs17141804	0.88[YRI][hapmap];0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs3024461	0.90[YRI][hapmap];0.85[AMR][1000 genomes]
rs3024462	0.90[YRI][hapmap];0.85[AMR][1000 genomes]
rs3024463	0.90[YRI][hapmap];0.85[AMR][1000 genomes]
rs3024464	0.91[YRI][hapmap];0.85[AMR][1000 genomes]
rs56988705	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73357508	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73357515	0.83[AFR][1000 genomes]
rs73357516	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73357521	0.83[AFR][1000 genomes];0.85[AMR][1000 genomes]
rs73720310	0.85[AMR][1000 genomes]
rs73720311	0.81[AFR][1000 genomes];0.85[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1031283	chr6:6084559-6160039	Enhancers Flanking Active TSS Strong transcription Weak transcription ZNF genes & repeats Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv970322	chr6:6127148-6140491	Enhancers Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:2 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:6138800-6139200	Enhancers	HUES48 Cell Line	embryonic stem cell
2	chr6:6138800-6139400	Enhancers	ES-I3 Cell Line	embryonic stem cell

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links