Variant report

Variant	rs12868663
Chromosome Location	chr13:30131894-30131895
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 18 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs10454589	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10454590	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17602182	1.00[ASN][1000 genomes]
rs3011607	0.80[AFR][1000 genomes]
rs34831702	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7328329	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs819388	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9578106	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9578107	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579398	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579399	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579400	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579401	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579402	0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579403	0.97[EUR][1000 genomes]
rs9579404	0.97[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv979	chr13:30122254-30167821	Enhancers Weak transcription Strong transcription Genic enhancers Flanking Active TSS Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region	2 gene(s)	inside rSNPs	diseases
2	esv3321803	chr13:30131202-30134550	Enhancers Weak transcription Strong transcription Genic enhancers	Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:102 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30092200-30133000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
2	chr13:30097200-30138400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
3	chr13:30103800-30137200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
4	chr13:30104200-30135400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
5	chr13:30105200-30136800	Weak transcription	Brain Germinal Matrix	brain
6	chr13:30113200-30141600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
7	chr13:30113800-30136200	Weak transcription	Rectal Smooth Muscle	rectum
8	chr13:30123000-30138600	Weak transcription	Pancreatic Islets	Pancreatic Islet
9	chr13:30123600-30136200	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
10	chr13:30125000-30137200	Weak transcription	Brain Anterior Caudate	brain
11	chr13:30125000-30147400	Weak transcription	A549	lung
12	chr13:30125800-30136600	Weak transcription	Brain Hippocampus Middle	brain
13	chr13:30125800-30142200	Weak transcription	K562	blood
14	chr13:30125800-30143200	Weak transcription	Gastric	stomach
15	chr13:30126000-30135800	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
16	chr13:30126000-30137000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
17	chr13:30126000-30138400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
18	chr13:30126000-30161400	Weak transcription	Primary B cells from cord blood	blood
19	chr13:30126200-30137200	Weak transcription	H9 Cell Line	embryonic stem cell
20	chr13:30126200-30147200	Weak transcription	Spleen	Spleen
21	chr13:30126600-30136000	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
22	chr13:30126600-30136000	Weak transcription	HUVEC	blood vessel
23	chr13:30126800-30135200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
24	chr13:30127400-30142200	Weak transcription	Placenta Amnion	Placenta Amnion
25	chr13:30127600-30135400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
26	chr13:30127600-30135800	Weak transcription	HSMM	muscle
27	chr13:30127600-30137200	Weak transcription	Brain Cingulate Gyrus	brain
28	chr13:30127600-30137800	Weak transcription	Stomach Smooth Muscle	stomach
29	chr13:30127600-30144000	Weak transcription	Fetal Intestine Small	intestine
30	chr13:30127600-30146200	Weak transcription	Right Ventricle	heart
31	chr13:30127600-30151400	Weak transcription	Aorta	Aorta
32	chr13:30127600-30156400	Weak transcription	Lung	lung
33	chr13:30127800-30135800	Weak transcription	H1 Cell Line	embryonic stem cell
34	chr13:30127800-30135800	Weak transcription	Muscle Satellite Cultured Cells	--
35	chr13:30127800-30136200	Weak transcription	Ovary	ovary
36	chr13:30127800-30136800	Weak transcription	Brain Angular Gyrus	brain
37	chr13:30127800-30137200	Weak transcription	Pancreas	Pancrea
38	chr13:30127800-30137800	Weak transcription	Brain Substantia Nigra	brain
39	chr13:30127800-30137800	Weak transcription	Colon Smooth Muscle	Colon
40	chr13:30127800-30143200	Weak transcription	Fetal Thymus	thymus
41	chr13:30127800-30147400	Weak transcription	Fetal Intestine Large	intestine
42	chr13:30127800-30147600	Weak transcription	Monocytes-CD14+_RO01746	blood
43	chr13:30128000-30134600	Weak transcription	Duodenum Smooth Muscle	Duodenum
44	chr13:30128000-30136000	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr13:30128000-30136000	Weak transcription	HMEC	breast
46	chr13:30128000-30136000	Weak transcription	Osteobl	bone
47	chr13:30128000-30136200	Weak transcription	HepG2	liver
48	chr13:30128000-30136600	Weak transcription	Brain Inferior Temporal Lobe	brain
49	chr13:30128000-30139400	Weak transcription	Left Ventricle	heart
50	chr13:30128000-30143600	Weak transcription	Primary T helper cells PMA-I stimulated	--

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