Variant report

Variant	rs10454590
Chromosome Location	chr13:30117740-30117741
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr13:30116350..30118708-chr13:30122829..30125095,2	K562	blood:
2	chr13:30112090..30114649-chr13:30117071..30118853,2	K562	blood:
3	chr13:30108354..30111384-chr13:30117429..30120230,3	K562	blood:
4	chr13:30111583..30114649-chr13:30115841..30119376,3	K562	blood:
5	chr13:30113881..30118037-chr13:30167742..30169938,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000139514	Chromatin interaction

Extended variants
information (count: 51 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:51)

rs_ID	r²[population]
rs10454589	1.00[CEU][hapmap];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12868663	0.80[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17602182	1.00[ASN][1000 genomes]
rs2150690	0.81[TSI][hapmap]
rs2482091	0.85[EUR][1000 genomes]
rs2482093	0.85[EUR][1000 genomes]
rs2490265	0.85[EUR][1000 genomes]
rs2669038	0.91[CEU][hapmap]
rs2802248	0.81[TSI][hapmap]
rs2989593	0.85[EUR][1000 genomes]
rs34369885	0.87[EUR][1000 genomes]
rs34496705	0.84[EUR][1000 genomes]
rs34831702	0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs478085	1.00[GIH][hapmap]
rs555913	0.91[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap]
rs71434731	0.90[AFR][1000 genomes];0.87[EUR][1000 genomes]
rs7328329	0.91[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7993193	0.87[EUR][1000 genomes]
rs7998704	0.91[CEU][hapmap]
rs819388	0.83[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314960	0.91[CEU][hapmap]
rs9314962	0.91[CEU][hapmap]
rs9578103	0.85[EUR][1000 genomes]
rs9578104	1.00[ASW][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.80[MKK][hapmap];0.85[EUR][1000 genomes]
rs9578105	0.87[EUR][1000 genomes]
rs9578106	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9578107	1.00[CEU][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579383	1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs9579384	1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.84[EUR][1000 genomes]
rs9579386	1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs9579387	0.85[EUR][1000 genomes]
rs9579388	1.00[ASW][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.80[MKK][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap];0.85[EUR][1000 genomes]
rs9579389	1.00[ASW][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.80[MKK][hapmap];0.81[TSI][hapmap];0.88[YRI][hapmap];0.85[EUR][1000 genomes]
rs9579390	1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.85[EUR][1000 genomes]
rs9579391	0.85[EUR][1000 genomes]
rs9579392	0.85[EUR][1000 genomes]
rs9579393	1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap];0.86[EUR][1000 genomes]
rs9579394	0.87[EUR][1000 genomes]
rs9579395	0.87[EUR][1000 genomes]
rs9579396	0.87[EUR][1000 genomes]
rs9579398	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[TSI][hapmap];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579399	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579400	0.91[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579401	0.91[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579402	0.91[CEU][hapmap];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579403	0.83[EUR][1000 genomes]
rs9579404	0.83[EUR][1000 genomes]
rs9579406	0.82[CEU][hapmap]
rs9579407	0.91[CEU][hapmap]
rs9579408	0.91[CEU][hapmap]
rs9579410	0.91[CEU][hapmap];1.00[CHD][hapmap]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30071000-30128800	Strong transcription	Dnd41	blood
2	chr13:30092200-30133000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr13:30097200-30138400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr13:30098800-30129000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr13:30103800-30122200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr13:30103800-30137200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:30104200-30135400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr13:30104800-30124600	Weak transcription	Right Ventricle	heart
9	chr13:30105000-30120000	Weak transcription	Brain Inferior Temporal Lobe	brain
10	chr13:30105000-30120200	Weak transcription	Brain Substantia Nigra	brain
11	chr13:30105200-30136800	Weak transcription	Brain Germinal Matrix	brain
12	chr13:30106600-30125400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
13	chr13:30107000-30123200	Weak transcription	K562	blood
14	chr13:30107200-30120600	Weak transcription	Fetal Thymus	thymus
15	chr13:30107200-30122200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr13:30107200-30123200	Weak transcription	A549	lung
17	chr13:30107200-30124200	Weak transcription	Placenta	Placenta
18	chr13:30107400-30122600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
19	chr13:30107400-30129200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
20	chr13:30107800-30119800	Weak transcription	Primary B cells from peripheral blood	blood
21	chr13:30108000-30122600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
22	chr13:30108800-30120000	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
23	chr13:30110400-30120000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr13:30110400-30122200	Weak transcription	Rectal Mucosa Donor 29	rectum
25	chr13:30110400-30123200	Weak transcription	Lung	lung
26	chr13:30110400-30123400	Weak transcription	Spleen	Spleen
27	chr13:30110400-30123400	Weak transcription	NHLF	lung
28	chr13:30110400-30124200	Weak transcription	HMEC	breast
29	chr13:30110400-30127200	Weak transcription	Brain Angular Gyrus	brain
30	chr13:30110600-30119600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
31	chr13:30110600-30119600	Weak transcription	Muscle Satellite Cultured Cells	--
32	chr13:30110600-30121000	Weak transcription	Ovary	ovary
33	chr13:30110600-30122200	Weak transcription	Primary monocytes fromperipheralblood	blood
34	chr13:30110600-30123200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr13:30111200-30119400	Weak transcription	Primary hematopoietic stem cells	blood
36	chr13:30111200-30123200	Weak transcription	Primary T helper cells fromperipheralblood	blood
37	chr13:30111600-30119000	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
38	chr13:30111600-30120600	Weak transcription	HSMM	muscle
39	chr13:30111800-30119600	Weak transcription	Primary B cells from cord blood	blood
40	chr13:30112400-30122400	Weak transcription	Fetal Intestine Small	intestine
41	chr13:30112600-30122200	Weak transcription	Gastric	stomach
42	chr13:30112800-30121200	Weak transcription	Primary T cells fromperipheralblood	blood
43	chr13:30112800-30122000	Weak transcription	Rectal Mucosa Donor 31	rectum
44	chr13:30112800-30122800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
45	chr13:30112800-30127200	Weak transcription	Brain Cingulate Gyrus	brain
46	chr13:30112800-30129200	Weak transcription	Skeletal Muscle Female	skeletal muscle
47	chr13:30113200-30119400	Weak transcription	Duodenum Smooth Muscle	Duodenum
48	chr13:30113200-30123000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
49	chr13:30113200-30124600	Weak transcription	Brain Anterior Caudate	brain
50	chr13:30113200-30141600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links