Variant report

Variant	rs9579400
Chromosome Location	chr13:30121370-30121371
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:35)

rs_ID	r²[population]
rs10220050	1.00[CEU][hapmap]
rs10454589	0.82[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10454590	0.91[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12868663	0.81[AMR][1000 genomes];0.91[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs17602182	1.00[ASN][1000 genomes]
rs2669038	1.00[CEU][hapmap]
rs34831702	0.93[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs478085	0.84[CEU][hapmap];0.93[GIH][hapmap]
rs555913	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.81[TSI][hapmap]
rs7328329	1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];0.87[TSI][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7998704	1.00[CEU][hapmap]
rs819388	0.91[CEU][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];0.81[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9314960	1.00[CEU][hapmap]
rs9314962	1.00[CEU][hapmap]
rs9578104	1.00[CHD][hapmap]
rs9578106	0.91[CEU][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9578107	0.90[CEU][hapmap];0.85[YRI][hapmap];0.93[AFR][1000 genomes];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579383	1.00[CHD][hapmap];0.92[GIH][hapmap]
rs9579384	1.00[CHD][hapmap];0.93[GIH][hapmap]
rs9579386	1.00[CHD][hapmap];0.93[GIH][hapmap]
rs9579388	1.00[CHD][hapmap];0.86[GIH][hapmap]
rs9579389	1.00[CHD][hapmap];0.93[GIH][hapmap]
rs9579390	1.00[CHD][hapmap];0.93[GIH][hapmap]
rs9579393	1.00[CHD][hapmap];0.93[GIH][hapmap]
rs9579398	0.91[CEU][hapmap];1.00[CHD][hapmap];0.93[GIH][hapmap];0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579399	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579401	0.87[ASW][hapmap];1.00[CEU][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];0.81[TSI][hapmap];1.00[YRI][hapmap];0.93[AMR][1000 genomes];0.92[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579402	1.00[CEU][hapmap];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs9579403	0.93[EUR][1000 genomes]
rs9579404	0.93[EUR][1000 genomes]
rs9579405	0.89[CEU][hapmap]
rs9579406	1.00[CEU][hapmap]
rs9579407	1.00[CEU][hapmap]
rs9579408	1.00[CEU][hapmap]
rs9579410	1.00[CEU][hapmap];1.00[CHD][hapmap];0.86[GIH][hapmap];0.81[TSI][hapmap]

No data

Chromatin state (count:119 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr13:30071000-30128800	Strong transcription	Dnd41	blood
2	chr13:30092200-30133000	Weak transcription	Primary T helper naive cells from peripheral blood	blood
3	chr13:30097200-30138400	Weak transcription	Primary T helper memory cells from peripheral blood 1	blood
4	chr13:30098800-30129000	Weak transcription	Primary neutrophils fromperipheralblood	blood
5	chr13:30103800-30122200	Weak transcription	Pancreatic Islets	Pancreatic Islet
6	chr13:30103800-30137200	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr13:30104200-30135400	Weak transcription	iPS-15b Cell Line	embryonic stem cell
8	chr13:30104800-30124600	Weak transcription	Right Ventricle	heart
9	chr13:30105200-30136800	Weak transcription	Brain Germinal Matrix	brain
10	chr13:30106600-30125400	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
11	chr13:30107000-30123200	Weak transcription	K562	blood
12	chr13:30107200-30122200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
13	chr13:30107200-30123200	Weak transcription	A549	lung
14	chr13:30107200-30124200	Weak transcription	Placenta	Placenta
15	chr13:30107400-30122600	Weak transcription	Primary T helper memory cells from peripheral blood 2	blood
16	chr13:30107400-30129200	Weak transcription	Primary T killer memory cells from peripheral blood	blood
17	chr13:30108000-30122600	Weak transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
18	chr13:30110400-30122200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr13:30110400-30123200	Weak transcription	Lung	lung
20	chr13:30110400-30123400	Weak transcription	Spleen	Spleen
21	chr13:30110400-30123400	Weak transcription	NHLF	lung
22	chr13:30110400-30124200	Weak transcription	HMEC	breast
23	chr13:30110400-30127200	Weak transcription	Brain Angular Gyrus	brain
24	chr13:30110600-30122200	Weak transcription	Primary monocytes fromperipheralblood	blood
25	chr13:30110600-30123200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
26	chr13:30111200-30123200	Weak transcription	Primary T helper cells fromperipheralblood	blood
27	chr13:30112400-30122400	Weak transcription	Fetal Intestine Small	intestine
28	chr13:30112600-30122200	Weak transcription	Gastric	stomach
29	chr13:30112800-30122000	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr13:30112800-30122800	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
31	chr13:30112800-30127200	Weak transcription	Brain Cingulate Gyrus	brain
32	chr13:30112800-30129200	Weak transcription	Skeletal Muscle Female	skeletal muscle
33	chr13:30113200-30123000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr13:30113200-30124600	Weak transcription	Brain Anterior Caudate	brain
35	chr13:30113200-30141600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
36	chr13:30113600-30122200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
37	chr13:30113600-30123200	Weak transcription	Brain Hippocampus Middle	brain
38	chr13:30113600-30124200	Weak transcription	Cortex derived primary cultured neurospheres	brain
39	chr13:30113600-30129200	Weak transcription	Skeletal Muscle Male	skeletal muscle
40	chr13:30113800-30136200	Weak transcription	Rectal Smooth Muscle	rectum
41	chr13:30114400-30123200	Weak transcription	Fetal Brain Female	brain
42	chr13:30114400-30126000	Weak transcription	Colon Smooth Muscle	Colon
43	chr13:30115000-30122600	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
44	chr13:30115200-30123000	Weak transcription	Fetal Muscle Trunk	muscle
45	chr13:30115200-30123400	Weak transcription	HUES64 Cell Line	embryonic stem cell
46	chr13:30115200-30125600	Weak transcription	Left Ventricle	heart
47	chr13:30115400-30122200	Weak transcription	HUES48 Cell Line	embryonic stem cell
48	chr13:30115400-30122200	Weak transcription	HSMMtube	muscle
49	chr13:30115600-30121400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
50	chr13:30115600-30123000	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell

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