Variant report

Variant	rs12879234
Chromosome Location	chr14:65093702-65093703
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65084248..65085892-chr14:65092660..65095587,2	MCF-7	breast:
2	chr14:64970364..64972673-chr14:65091220..65094066,2	MCF-7	breast:
3	chr14:65005659..65007970-chr14:65092237..65094144,2	MCF-7	breast:
4	chr14:64970372..64973152-chr14:65090734..65094178,4	MCF-7	breast:
5	chr14:65079600..65081174-chr14:65092435..65094257,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000259116	Chromatin interaction
ENSG00000126803	Chromatin interaction
ENSG00000126804	Chromatin interaction

Extended variants
information (count: 11 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:10)

rs_ID	r²[population]
rs12878181	1.00[ASN][1000 genomes]
rs35170016	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs35262226	0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35265133	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899134	1.00[ASN][1000 genomes]
rs4902280	1.00[ASN][1000 genomes]
rs55739639	1.00[ASN][1000 genomes]
rs55795508	1.00[ASN][1000 genomes]
rs71416332	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003379	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65079600-65093800	Weak transcription	Right Atrium	heart
2	chr14:65090600-65095200	Weak transcription	Osteobl	bone
3	chr14:65090800-65095200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr14:65091000-65095200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
5	chr14:65092400-65095200	Weak transcription	Hela-S3	cervix
6	chr14:65092400-65095400	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr14:65092600-65095200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
8	chr14:65092600-65095400	Weak transcription	Fetal Lung	lung
9	chr14:65092600-65095600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
10	chr14:65092600-65095600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr14:65092600-65099000	Weak transcription	Spleen	Spleen
12	chr14:65092600-65103000	Weak transcription	Fetal Muscle Leg	muscle
13	chr14:65092800-65094800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:65092800-65094800	Weak transcription	A549	lung
15	chr14:65092800-65094800	Weak transcription	NHLF	lung
16	chr14:65092800-65095000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
17	chr14:65092800-65095000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
18	chr14:65092800-65095200	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
19	chr14:65092800-65095200	Weak transcription	Fetal Intestine Large	intestine
20	chr14:65092800-65095200	Weak transcription	Placenta	Placenta
21	chr14:65092800-65095200	Weak transcription	Fetal Stomach	stomach
22	chr14:65092800-65095200	Weak transcription	Rectal Mucosa Donor 29	rectum
23	chr14:65092800-65095200	Weak transcription	Stomach Smooth Muscle	stomach
24	chr14:65092800-65095400	Weak transcription	HUES6 Cell Line	embryonic stem cell
25	chr14:65092800-65095400	Weak transcription	HUES64 Cell Line	embryonic stem cell
26	chr14:65092800-65095600	Weak transcription	H1 Cell Line	embryonic stem cell
27	chr14:65092800-65095600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
28	chr14:65092800-65097600	Enhancers	Colon Smooth Muscle	Colon
29	chr14:65092800-65099000	Weak transcription	Colonic Mucosa	Colon
30	chr14:65092800-65100000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
31	chr14:65093000-65095000	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
32	chr14:65093000-65095000	Weak transcription	Esophagus	oesophagus
33	chr14:65093000-65095200	Weak transcription	NHEK	skin
34	chr14:65093000-65095600	Weak transcription	Rectal Mucosa Donor 31	rectum
35	chr14:65093000-65103000	Weak transcription	Fetal Intestine Small	intestine
36	chr14:65093200-65094800	Weak transcription	Rectal Smooth Muscle	rectum
37	chr14:65093200-65098200	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
38	chr14:65093600-65095400	Weak transcription	Stomach Mucosa	stomach

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