Variant report

Variant	rs35170016
Chromosome Location	chr14:65049895-65049896
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 6 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:5)

rs_ID	r²[population]
rs12878181	1.00[AMR][1000 genomes]
rs12879234	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs35262226	0.82[EUR][1000 genomes]
rs35265133	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs71416332	1.00[AFR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:11 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65040200-65051200	Weak transcription	Stomach Smooth Muscle	stomach
2	chr14:65040200-65058000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr14:65047800-65059000	Weak transcription	Gastric	stomach
4	chr14:65048000-65051000	Weak transcription	Colon Smooth Muscle	Colon
5	chr14:65048000-65051000	Weak transcription	Rectal Smooth Muscle	rectum
6	chr14:65048800-65068400	Weak transcription	Pancreas	Pancrea
7	chr14:65049000-65050800	Weak transcription	Fetal Muscle Leg	muscle
8	chr14:65049000-65051000	Weak transcription	Psoas Muscle	Psoas
9	chr14:65049000-65052000	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
10	chr14:65049200-65050400	Weak transcription	Skeletal Muscle Male	skeletal muscle
11	chr14:65049600-65050000	Weak transcription	Skeletal Muscle Female	skeletal muscle

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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