Variant report

Variant	rs35265133
Chromosome Location	chr14:65100704-65100705
allele	A/C
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64968284..64972899-chr14:65099732..65106261,9	MCF-7	breast:
2	chr14:65098847..65101532-chr14:65103067..65106443,3	MCF-7	breast:
3	chr14:64809273..64811150-chr14:65099348..65101805,2	MCF-7	breast:
4	chr14:65002195..65004790-chr14:65100149..65101871,2	MCF-7	breast:
5	chr14:65005746..65011576-chr14:65100375..65105465,11	MCF-7	breast:

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000259116	Chromatin interaction
ENSG00000126803	Chromatin interaction
ENSG00000259160	Chromatin interaction

Extended variants
information (count: 9 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs12878181	1.00[AMR][1000 genomes];0.82[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12879234	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs35170016	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs35262226	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4899134	1.00[ASN][1000 genomes]
rs4902280	1.00[ASN][1000 genomes]
rs71416332	1.00[AFR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003379	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:45 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65092600-65103000	Weak transcription	Fetal Muscle Leg	muscle
2	chr14:65093000-65103000	Weak transcription	Fetal Intestine Small	intestine
3	chr14:65095800-65103000	Weak transcription	Esophagus	oesophagus
4	chr14:65095800-65103000	Weak transcription	Stomach Mucosa	stomach
5	chr14:65096000-65101400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:65096000-65103000	Weak transcription	H1 Cell Line	embryonic stem cell
7	chr14:65096000-65103000	Weak transcription	HUES6 Cell Line	embryonic stem cell
8	chr14:65096000-65105600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
9	chr14:65096000-65106200	Weak transcription	HUES48 Cell Line	embryonic stem cell
10	chr14:65096200-65101600	Weak transcription	iPS-15b Cell Line	embryonic stem cell
11	chr14:65096200-65103000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr14:65096600-65103200	Weak transcription	NHEK	skin
13	chr14:65096800-65104200	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr14:65096800-65104400	Weak transcription	NHDF-Ad	bronchial
15	chr14:65097800-65103200	Weak transcription	NHLF	lung
16	chr14:65098800-65101600	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
17	chr14:65099000-65100800	Enhancers	Primary monocytes fromperipheralblood	blood
18	chr14:65099000-65100800	Enhancers	Placenta	Placenta
19	chr14:65099200-65103200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
20	chr14:65099400-65111600	Weak transcription	Osteobl	bone
21	chr14:65099600-65102800	Weak transcription	Brain Angular Gyrus	brain
22	chr14:65099600-65103000	Weak transcription	Brain Anterior Caudate	brain
23	chr14:65099600-65103000	Weak transcription	Brain Cingulate Gyrus	brain
24	chr14:65099600-65103000	Weak transcription	Brain Hippocampus Middle	brain
25	chr14:65099600-65103000	Weak transcription	Brain Inferior Temporal Lobe	brain
26	chr14:65099600-65103000	Weak transcription	Brain Substantia Nigra	brain
27	chr14:65099600-65103000	Weak transcription	Rectal Smooth Muscle	rectum
28	chr14:65099600-65103200	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
29	chr14:65099600-65104400	Weak transcription	Fetal Lung	lung
30	chr14:65100000-65100800	Enhancers	Foreskin Fibroblast Primary Cells skin02	Skin
31	chr14:65100200-65101600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr14:65100200-65103000	Weak transcription	Fetal Intestine Large	intestine
33	chr14:65100200-65103000	Weak transcription	Rectal Mucosa Donor 29	rectum
34	chr14:65100400-65100800	Enhancers	Hela-S3	cervix
35	chr14:65100400-65102800	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
36	chr14:65100400-65102800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
37	chr14:65100400-65103000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
38	chr14:65100400-65103000	Weak transcription	Colonic Mucosa	Colon
39	chr14:65100400-65103000	Weak transcription	Rectal Mucosa Donor 31	rectum
40	chr14:65100400-65103200	Weak transcription	Primary B cells from peripheral blood	blood
41	chr14:65100600-65101000	Weak transcription	A549	lung
42	chr14:65100600-65103000	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
43	chr14:65100600-65103000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
44	chr14:65100600-65103000	Weak transcription	Sigmoid Colon	Sigmoid Colon
45	chr14:65100600-65103200	Weak transcription	Spleen	Spleen

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